Table 1.
List of samples (and associated information) used in phylogenetic analysis. Boldfaced entries represent samples newly sequenced in this study.
| SPECIES | Identifier in Figure 1 | Specific locality | Source (catalog reference) | Genbank Accession Numbers | |
|---|---|---|---|---|---|
| Cytochrome b | CHRNA1 | ||||
| Bassaricyon medius orinomus | Panama | Limbo plot | NYSM ZT105 | EF107703 | KC773757 |
| Bassaricyon medius orinomus | Panama | Rio Juan Grande | NYSM ZT106 | EF107704 | KC773758 |
| Bassaricyon medius orinomus | Panama | Limbo plot | Koepfli et al. (2007) | DQ660300 | DQ660210 |
| Bassaricyon medius medius | Ecuador | Las Pampas | QCAZ 8659; tk149097 | EF107706 | KC773759 |
| Bassaricyon medius medius | Ecuador | Las Pampas | QCAZ 8658; tk149094 | EF107707 | KC773760 |
| Bassaricyon alleni | Guyana | Iwokrama | ROM 107380 | EF107710 | KC773763 |
| Bassaricyon alleni | Peru | Rio Cenapa | MVZ 155219; Koepfli et al. (2007) | DQ660299 | DQ660209 |
| Bassaricyon gabbii | Costa Rica | Monteverde | KU 165554 | JX948744 | --- |
| Bassaricyon neblina neblina | Ecuador | La Cantera | QCAZ 8662; tk149108 | EF107708 | KC773761 |
| Bassaricyon neblina neblina | Ecuador | Otonga Reserve | QCAZ 8661; tk149001 | EF107709 | KC773762 |
| Bassaricyon neblina osborni | Colombia | Vicinity of Cali | Genbank | X94931 | DQ533950 |
| Potos flavus | Potos flavus | Costa Rica | Koepfli et al. (2007) | DQ660304 | DQ660214 |
| Procyon cancrivorus | Procyon cancrivorus | Paraguay | Koepfli et al. (2007) | DQ660305 | DQ660215 |
| Procyon lotor | Procyon lotor | Montana, USA | Koepfli et al. (2007) | DQ660306 | AF498152 |
| Bassariscus astutus | Bassariscus astutus | Arizona, USA | Koepfli et al. (2007) | AF498159 | AF498151 |
| Bassariscus sumichrasti | Bassariscus sumichrasti | Mexico | Koepfli et al. (2007) | DQ660301 | DQ660211 |
| Nasua nasua | Nasua nasua | Bolivia | Koepfli et al. (2007) | DQ660303 | DQ660213 |
| Nasua narica | Nasua narica | Panama | Koepfli et al. (2007) | DQ660302 | DQ660212 |
| Enhydra lutris | Mustelidae | Attu Island, Alaska, USA | Koepfli et al. (2007) | AF057120 | AF498131 |
| Eira barbara | Mustelidae | Bolivia | Koepfli et al. (2007) | AF498154 | AF498144 |
| Taxidea taxus | Mustelidae | New Mexico, USA | Koepfli et al. (2007) | AF057132 | AF498148 |
| Neovison vison | Mustelidae | Texas, USA | Koepfli et al. (2007) | AF057129 | AF498140 |
| Martes americana | Mustelidae | Rocky Mtn Research Station, USA | Koepfli et al. (2007) | AF057130.1 | AF498141 |
| Lontra longicaudis | Mustelidae | Kagka, Peru | Koepfli et al. (2007) | AF057123.1 | AF498134 |
| Ictonyx libyca | Mustelidae | Brookfield Zoo | Genbank | EF987739.1 | EF987699 |
| Meles meles | Mustelidae | No voucher infromation | Koepfli et al. (2007) | AM711900.1 | AF498147 |
| Mephitis mephitis | Mephitidae | San Diego Zoo | Eizirik et al. (2010), Yu et al. (2011) | HM106332.1 | GU931029.1 |
| Spilogale putorius | Mephitidae | Arnason et al. (2007), Eizirik et al. (2010) | NC_010497.1 | GU931030.1 | |
| Ailurus fulgens | Ailuridae | Arnason et al. (2007), Eizirik et al. (2010) | AM711897.1 | GU931037.1 | |
| Arctocephalus australis | Otariidae | Davis et al. (2004), Fulton and Strobeck (2006) | AY377329.1 | DQ205738.1 | |
| Odobenus rosmarus | Odobenidae | Bardeleben et al. (2005), Fulton and Strobeck (2010) | GU174611.1 | DQ093076.1 | |
| Phoca fasciata | Phocidae | Fulton and Strobeck (2010) | GU167294.1 | GU167764.1 | |
| Mirounga angustirostris | Phocidae | Bardeleben et al. (2005), Peng et al. (2007) | AY377325.1 | DQ093075.1 | |
| Canis lupus | Canis lupus | Delisle and Strobeck (2005), Fulton and Strobeck (2006) | AY598499 | DQ205757 | |
| Nyctereutes procyonoides | other Canidae | Eizirik et al. (2010), Chen and Zhang (2012) | GU256221 | GU931027.1 | |
| Urocyon cinereoargenteus | other Canidae | Eizirik et al. (2010), Naidu et al. (2012) | JF489121.1 | GU931028.1 | |
| Ailuropoda melanoleuca | Ursidae | Bardeleben et al. (2005), Peng et al. (2007) | NC_009492 | DQ093074.1 | |
| Ursus americanus | Ursidae | Delisle and Strobeck (2002), Fulton and Strobeck (2006) | NC_003426.1 | DQ205726.1 | |