TABLE 1 .
Pseudogenes in S. Typhimurium 94-213 that are functional in strains SL1344, DT104, and D23580
| Systematic ID | Common name | SL1344 orthologue | Pseudogene ina: |
Annotation | ||
|---|---|---|---|---|---|---|
| 97-10215 | 03-715 | 98-652 | ||||
| DT2_03371 | SL0336 | Y | Y | N | Putative inner membrane protein, regulator | |
| DT2_04541 | cof | SL0451 | Y | Y | Y | Putative hydrolase |
| DT2_05801 | fepE | SL0577 | N | N | N | Ferric enterobactin/enterochelin transporter |
| DT2_06161 | dpiB | SL0613 | Y | Y | Y | Two-component regulatory system |
| DT2_08721 | ltaA | SL0873 | N | N | N | l-Allo-threonine aldolase |
| DT2_09191 | ycaI | SL0920 | N | N | N | Putative recombination protein |
| DT2_10901 | yceA | SL1093 | N | N | N | Hypothetical protein |
| DT2_14831 | SL1490 | Y | Y | Y | Putative 1,4-alpha-glucan-branching enzyme (glgB) | |
| DT2_15221 | pcgL | SL1530 | Y | Y | Y | d-Alanyl-d-alanine dipeptidase for peptidoglycan |
| DT2_17401 | slp | SL1748 | Y | Y | Y | Putative outer membrane, pseudogene in ST313 |
| DT2_21071 | SL2110 | Y | Y | Y | Putative inner membrane protein | |
| DT2_24911 | SL2492 | N | N | N | Putative anaerobic dimethyl sulfoxide reductase | |
| DT2_26381 | SL2663 | Y | Y | Y | Putative ABC transporter transmembrane region | |
| DT2_30271 | SL3107 | Y | Y | Y | Putative amidohydrolase | |
| DT2_31181 | ygjU | SL3198 | N | N | N | Putative dicarboxylate permease |
| DT2_32241 | yhcG | SL3304 | Y | Y | Y | Putative cytoplasmic protein |
| DT2_33671 | yhfL | SL3447 | Y | N | Y | Putative outer membrane lipoprotein |
| DT2_35271 | Tag | SL3608 | N | N | N | 3-Methyl-adenine DNA glycosylase I |
| DT2_36451 | cigR | SL3727 | N | N | N | Putative inner membrane protein |
| DT2_40991 | aphA | SL4185 | Y | Y | Y | Nonspecific acid phosphatase/phosphotransferase |
| DT2_43031 | mgtA | SL4387 | Y | Y | Y | Mg2-ATPase transporter |
a
Y, yes; N, no.