Table 5. Performances of SVM using amino acid composition (AAC) and p-collocated AA pairs.
Feature Name | Test Accuracy (%) | MCC | Sensitivity | Specificity |
AAC | 73.12 | 0.35 | 0.38 | 0.91 |
p = 0 | 77.55 | 0.47 | 0.45 | 0.94 |
p = 1 | 77.02 | 0.46 | 0.49 | 0.91 |
p = 2 | 76.57 | 0.44 | 0.47 | 0.91 |
p = 3 | 76.65 | 0.44 | 0.44 | 0.93 |
p = 4 | 77.02 | 0.45 | 0.45 | 0.93 |
p = 5 | 76.46 | 0.44 | 0.48 | 0.91 |
p = 6 | 77.69 | 0.47 | 0.50 | 0.91 |
p = 7 | 76.37 | 0.44 | 0.44 | 0.93 |
p = 8 | 76.82 | 0.45 | 0.47 | 0.92 |
p = 9 | 77.52 | 0.47 | 0.51 | 0.91 |
Mean (p = 0,1, …, 9) | 76.967 | 0.453 | 0.47 | 0.92 |