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. 2013 Sep 3;8(9):e72222. doi: 10.1371/journal.pone.0072222

Table 1. Primers used for MLST analysis of Asian C. neoformans var. grubii isolates.

Locus Primer name Primer sequence Amplification conditions Reference
CAP59 CAP59LF 5′ GTGAACAAGCTGCGGC 3′ 96°C 5min; 35 cycles: 96°C 30s, 56°C 30s, 72°C 1min; Hagen et al., 2012b;
CAP59LR 5′ GGATTCAGTGTGGTGGAAGA 3′ 72°C 5min Fraser et al., 2005
GPD1 GPD1LF 5′ GGTTGTCAAGGTTGGAATCAACGG 3′ 96°C 5min; 35 cycles: 96°C 30s, 61°C 30s, 72°C 1min; Hagen et al., 2012b
GPD1 LR 5′ GGAGCGGAAATGACGACCTTCTT 3′ 72°C 5min
IGS1 IGS1F 5′ CAGACGACTTGAATGGGAACG 3′ 96°C 5min; 35 cycles: 96°C 30s, 61°C 30s, 72°C 1min; Bovers et al., 2008b
IGS2R 5′ ATGCATAGAAAGCTGTTGG 3′ 72°C 5min
LAC1 LAC1F 5′ GGCGATACTATTATCGTA 3′ 96°C 5min; 35 cycles: 96°C 30s, 52°C 30s, 72°C 1min; Bovers et al., 2008b
LAC1R 5′ TTCTGGAGTGGCTAGAGC 3′ 72°C 5min
PLB1 PLB1F 5′ CTTCAGGCGGAGAGAGGTTT 3′ 96°C 5min; 35 cycles: 96°C 30s, 56°C 30s, 72°C 1min; Litvintseva et al., 2006
PLB1R 5′GATTTGGCGTTGGTTTCAGT 3′ 72°C 5min
SOD1 JOHE7777 5′ TTCAACCACGAATATGTA 3′ 96°C 5min; 35 cycles: 96°C 30s, 52°C 30s, 72°C 1min; D'Souza et al., 2004
JOHE7779 5′ AAGCCTCTCATCCATATCTT 3′ 72°C 5min
URA5 URA5F 5′ ATGTCCTCCCAAGCCCTCGAC 3′ 96°C 5min; 35 cycles: 96°C 30s, 63°C 30s, 72°C 1min; Meyer et al., 2003
URA5R 5′ TTAAGACCTCTGAACACCGTACTC 3′ 72°C 5min