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. 2013 Sep 3;8(9):e72222. doi: 10.1371/journal.pone.0072222

Table 6. DNA polymorphisms in each MLST locus and concatenated sequences of Asian C. neoformans var. grubii isolates.

Locus Length S γ θs k h Hd D FD FF Fs
CAP59 576 6 0.0001 0.891 0.046 3 0.029 −1.737* −4.598** −4.319** −3.238
GPD1 544 11 0.0014 1.633 0.753 6 0.597 −1.173 −3.525** −3.190** −0.153
IGS1 725 14 0.0045 2.078 3.274 5 0.327 1.326 0.058 0.669 10.501
LAC1 471 15 0.0018 2.226 0.867 7 0.658 −1.427 −6.636** −5.561** −0.437
PLB1 533 10 0.0005 1.484 0.281 5 0.234 −1.719 −3.840** −3.686** −2.192
SOD1 536 11 0.0001 1.633 0.051 3 0.013 −2.110** −6.755** −6.051** −3.066
URA5 637 11 0.0009 1.633 0.542 5 0.504 −1.455 −5.948** −5.143** −0.319
Concatenated 4022 78 0.0015 11.577 5.816 28 0.792 −1.430 −9.170** −6.446** −0.520

S: number of polymorphic sites.

π: nucleotide diversity.

θs: Watterson's θ per sequence.

k: average number of nucleotide differences per sequence.

h: number of haplotypes.

Hd: haplotype diversity.

D, FD, FF and Fs: Tajima's D, Fu and Li's D*, Fu and Li's F* and Fu's Fs, respectively. The p value <0.05, *; <0.01, **; <0.001, ***.