Table 6. DNA polymorphisms in each MLST locus and concatenated sequences of Asian C. neoformans var. grubii isolates.
Locus | Length | S | γ | θs | k | h | Hd | D | FD | FF | Fs |
CAP59 | 576 | 6 | 0.0001 | 0.891 | 0.046 | 3 | 0.029 | −1.737* | −4.598** | −4.319** | −3.238 |
GPD1 | 544 | 11 | 0.0014 | 1.633 | 0.753 | 6 | 0.597 | −1.173 | −3.525** | −3.190** | −0.153 |
IGS1 | 725 | 14 | 0.0045 | 2.078 | 3.274 | 5 | 0.327 | 1.326 | 0.058 | 0.669 | 10.501 |
LAC1 | 471 | 15 | 0.0018 | 2.226 | 0.867 | 7 | 0.658 | −1.427 | −6.636** | −5.561** | −0.437 |
PLB1 | 533 | 10 | 0.0005 | 1.484 | 0.281 | 5 | 0.234 | −1.719 | −3.840** | −3.686** | −2.192 |
SOD1 | 536 | 11 | 0.0001 | 1.633 | 0.051 | 3 | 0.013 | −2.110** | −6.755** | −6.051** | −3.066 |
URA5 | 637 | 11 | 0.0009 | 1.633 | 0.542 | 5 | 0.504 | −1.455 | −5.948** | −5.143** | −0.319 |
Concatenated | 4022 | 78 | 0.0015 | 11.577 | 5.816 | 28 | 0.792 | −1.430 | −9.170** | −6.446** | −0.520 |
S: number of polymorphic sites.
π: nucleotide diversity.
θs: Watterson's θ per sequence.
k: average number of nucleotide differences per sequence.
h: number of haplotypes.
Hd: haplotype diversity.
D, FD, FF and Fs: Tajima's D, Fu and Li's D*, Fu and Li's F* and Fu's Fs, respectively. The p value <0.05, *; <0.01, **; <0.001, ***.