Table 3.
ΔSASA values determined from thermodynamic parameters for the binding of various wildtype BH3 peptides to Bcl2 in Sodium phosphate buffer containing 100mM NaCl at 25°C and pH 7
| Peptide | Sequence | ΔH60 / kcal.mol−1 | ΔCp / kcal.mol−1.K−1 | ΔSASApolar / Å2 | ΔSASAapolar / Å2 | ΔSASAtotal / Å2 |
|---|---|---|---|---|---|---|
| Class I: LXXXAD motif | ||||||
| Bmf | QAEVQIARKLQCIADQFHRL | −11.30 ± 0.36 | −0.269 ± 0.009 | −666 ± 22 | −1133 ± 38 | −1800 ± 60 |
| Puma | QWAREIGAQLRRMADDLNAQ | −18.41 ± 1.24 | −0.352 ± 0.012 | −1002 ± 57 | −1538 ± 65 | −2540 ± 122 |
| Class II: LXXX[G/S]D motif | ||||||
| Bak | STMGQVGRQLAIIGDDINRR | −24.25 ± 0.71 | −0.391 ± 0.011 | −1250 ± 36 | −1768 ± 49 | −3017 ± 84 |
| Bim | RPEIWIAQELRRIGDEFNAY | −11.93 ± 0.25 | −0.302 ± 0.006 | −720 ± 16 | −1261 ± 26 | −1981 ± 42 |
| Bid | DIIRNIARHLAQVGDSMDRS | −11.65 ± 0.18 | −0.211 ± 0.002 | −623 ± 9 | −932 ± 12 | −1555 ± 22 |
| Bax | ASTKKLSESLKRIGDELDSN | −14.20 ± 0.36 | −0.203 ± 0.004 | −707 ± 18 | −942 ± 23 | −1649 ± 40 |
| Bik | EGSDALALRLACIGDEMDVS | −13.38 ± 0.21 | −0.209 ± 0.001 | −684 ± 9 | −952 ± 8 | −1636 ± 18 |
| Bad | WAAQRYGRELRRMSDEFVDS | −10.18 ± 0.13 | −0.185 ± 0.001 | −545 ± 6 | −816 ± 7 | −1361 ± 13 |
| Hrk | SAAQLTAARLKALGDELHQR | −7.94 ± 0.35 | −0.193 ± 0.005 | −471 ± 18 | −809 ± 25 | −1281 ± 44 |
Errors were calculated from at least three independent measurements to one standard deviation.