Table 3. Most frequent periods for three categories of tandem repeats in conifer genomic sequence.
Pinus taeda (BAC + Fosmid) | Picea glauca (BAC) | Taxus mairei (Fosmid) | |||||||
Micro | Mini | Sat | Micro | Mini | Sat | Micro | Mini | Sat | |
Most frequent period | 2 | 21 | 123 | 2 | 27 | 122 | 2 | 24 | 230 |
Cumulative length | 126,254 | 216,194 | 154,835 | 876 | 843 | 389 | 1,411 | 587 | 1,598 |
Num. of loci | 64,740 | 10,508 | 1,258 | 11 | 10 | 1 | 32 | 19 | 2 |
Most frequent period (%) | 0.05% | 0.08% | 0.06% | 0.33% | 0.32% | 0.15% | 0.09% | 0.04% | 0.10% |
Total cumulative length (bp) | 241,822 | 4,323,361 | 2,650,740 | 925 | 6,603 | 1,864 | 3,024 | 15,875 | 5,871 |
Total (%) | 0.09% | 1.56% | 0.96% | 0.35% | 2.49% | 0.70% | 0.19% | 0.98% | 0.36% |
Micro – Microsatellites (2–8 bp).
Mini – Minisatellites (9–100 bp).
Sat – Satellites (>100 bp).