Table 5. Filtered (full-length) vs. Unfiltered (partial and full-length) repetitive content estimates.

	P + F (Homology)	Filtered (Homology)	P + F (de novo)	Filtered (de novo)
Class I	20.41%	1.39%	73.39%	21.82%
Class II	4.03%	0%	1.52%	0.53%
Other	3.06%	2.6%	10.91%	4.16%
Total	27.50%	3.99%	85.82%	26.51%