Table 3.

D. discoideum Contents at dictyBase as of March 2011.

DATA	ANNOTATIONS
• 13,541 Automated Gene Predictions [3]	• 11,989 Curated Models#
• 1,770 GenBank Records	• 34 Alternative transcripts
• 163,182 Expressed Sequence Tags [6, 7]	• 651 Pseudogenes#
• 7,158 PubMed References	• 520 Transposable elements (not curated gene models#)
• External Data:
○ 4,123 dictyExpress Microarray expression profiles [23]	• Gene products for 9,076 genes
○ 12,087 dictyExpress RNAseq expression profiles [23, 27]	• Brief Descriptions for 7,338 genes
○ 2,257 High Through-Put Phenotypes/Princeton [30]	• Name descriptions for 4,305 genes
○ In situ hybridization: 150 images (Tsukuba Atlas; [31, 32]	• Mutant Phenotypes for 822 genes
○ Insertional Mutants: 817 Links (BCM)	• Gene Ontology annotations for 7,559 genes
• 8,620 Genes with Orthologs	• Summary paragraphs for 647 genes
• 9,955 Proteins with InterPro domains	• 5,735 Genes with basic annotations
• 1,891 Colleagues	• 2,822 Genes comprehensively annotated
• Dicty Stock Center:	• 275 Genes with Community Annotations*
○ 1,853 strains
○ 716 plasmids

^#explained in Subheading 3.2,

^*discussed in Subheading 3.5.