Table 1. RNAi screen parameters from different published influenza RNAi screens.
Tran et al. (this study) | Shapiraet al.11 | Koniget al.14 | Karlaset al.13 | Brasset al.17 | Suiet al.15 | Haoet al.16 | |
---|---|---|---|---|---|---|---|
Approach | RNAi screen | Yeast-2-hybrid• RNAi screen | RNAi screen | RNAi screen | RNAi screen | Random homozygous gene perturbation | RNAi screen |
Screen parameter | Selection of surviving cells after influenza infection | Level of Renilla luciferase expression in 293T reporter cells | Level of Renilla luciferase expression | Level of Renilla luciferase expression in 293T reporter cells | Stained for surface expression of HA | Host gene perturbation | Level of reporter gene expression |
End point (h.p.i.) | 72 h.p.i. | 48 h.p.i. | 36 h.p.i. | 24 h.p.i. | 12 h.p.i. | 48 h.p.i. | 24–48 h.p.i. |
No. of genes screened | 21,415 | 1745 | 19 628 | 22 843 | 17 877 | NA | 13 071 |
Delivery method | Lentiviral | Transfection | Transfection | Transfection | Transfection | Lentiviral | Infection with recombinant virus |
Total candidates | 1256 Genes | 616 genes | 295 Genes | 287 Genes | 312 Genes | 110 Clones | 110 |
Genes in biological replicates | 138 | NA | NA | NA | NA | NA | NA |
Virus used | NY55 (H3N2), PR8 (H3N2), pandemic California (H1N1) | PR8 (H1N1), Udorn (H3N2) | Recombinant WSN (H1N1), HA-luciferase | WSN (H1N1) | PR8 (H1N1) | Udorn (H3N2) | Recombinant WSN (H1N1) with VSV G protein and NA-luciferase |
Cell line used in screen | A549 cells | 293T and HBEC cells | A549 cells | A549 and 293T cells | U2OS cells | MDCK cells | Drosophila cells |
NA, not available