Table 3.
Genes Preferentially Expressed in Fast Myotubes
| Gene Symbol | Probe Set ID | Fold Change | Gene Title/Comments |
|---|---|---|---|
| Apoptosis | |||
| BAG3 | GgaAffx.12756.1.S1_at | 2.53 | BCL2-associated athanogene 3 |
| CABC1 | Gga.6127.1.S1_at | 2.63 | chaperone, ABC1 activity of bc1 complex homolog (S. pombe) |
| MCL1 | Gga.16560.2.S1_s_at | 2.35 | myeloid cell leukemia sequence 1 (BCL2-related) |
| TNFRSF6B | Gga.5386.1.S1_at | 4.22 | tumor necrosis factor receptor superfamily, member 6b, decoy |
| Cell Adhesion | |||
| ADRM1 | Gga.4135.2.S1_a_at | 2.37 | adhesion regulating molecule 1 |
| ITGB3 | Gga.1039.1.S1_at | 6.89 | integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) |
| K-CAM | Gga.728.1.S1_a_at | 4.24 | B-cadherin |
| NCAM1 | GgaAffx.22381.3.S1_at | 2.16 | neural cell adhesion molecule 1 |
| Cell Cycle | |||
| ANAPC2 | Gga.7685.3.S1_a_at | 3.35 | anaphase promoting complex subunit 2 |
| CDT1 | Gga.7249.1.S1_at | 2.64 | chromatin licensing and DNA replication factor 1 |
| Chromatin Remodelling | |||
| SMARCD1 | GgaAffx.3872.1.S1_at | 2.03 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 |
| SMARCE1 | GgaAffx.11797.1 .S1_at | 2.35 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 |
| Cytoskeleton | |||
| CAPZB | Gga.4050.2.S1_a_at | 2.22 | capping protein (actin filament) muscle Z-line, beta |
| DCTN4 | GgaAffx.2799.1.S1_at | 2.51 | dynactin 4 (p62) |
| HIP1 | GgaAffx.22557.1.S1_s_at | 2.04 | huntingtin interacting protein 1 |
| EMILIN3 | GgaAffx.2369.1.S1_at | 2.36 | elastin microfibril interfacer 3 |
| MGP | Gga.540.1.S1_at | 8.37 | matrix Gla protein |
| TUFT1 | Gga.14691.1.S1_at | 4.61 | tuftelin 1 |
| Metabolism | |||
| ACOT7 | Gga.5995.1.S1_at | 2.16 | acyl-CoA thioesterase 7 |
| ASCC3L1 | Gga.9209.1.S1_at | 2.96 | activating signal cointegrator 1 complex subunit 3-like 1 |
| AYTL2 | Gga. 16935.1.S1_at | 2.05 | acyltransferase like 2 |
| B4GALT2 | Gga.2424.2.S1_a_at | 2.70 | UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 |
| CKB | Gga.2722.1.S1_a_at | 3.48 | creatine kinase, brain |
| CREB3L1 | GgaAffx.5291.1.S1_at | 2.38 | cAMP responsive element binding protein 3-like 1 |
| FBP1 | Gga.5139.1.S1_at | 3.77 | fructose-1,6-bisphosphatase 1 |
| FOXRED1 | Gga.18113.1.S1_at | 2.33 | FAD-dependent oxidoreductase domain containing 1 |
| GALE | Gga. 9722.1.S1_at | 2.02 | UDP-galactose-4-epimerase |
| GALNS | GgaAffx.21893.2.S1_s_at | 2.24 | galactosamine (N-acetyl)-6-sulfate sulfatase (Morquio syndrome, mucopolysaccharidosis type IVA) |
| GALNT5 | GgaAffx.7959.1.S1_at | 2.62 | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5) |
| GALT | GgaAffx.1454.1.S1_at | 2.55 | galactose-1-phosphate uridylyltransferase |
| GCAT | Gga. 16744.1.S1_at | 2.78 | glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase) |
| GCK | Gga.12945.1.S1_at | 3.04 | glucokinase |
| GOT2 | Gga.4425.1.S2_at | 2.60 | glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2) |
| GPD2 | Gga.11036.1.S1_s_at | 2.94 | glycerol-3-phosphate dehydrogenase 2 (mitochondrial) |
| GPI | GgaAffx.11394.1.S1_s_at | 2.35 | glucose phosphate isomerase |
| GRHPR | Gga. 7241.1.S1_at | 2.42 | glyoxylate reductase/hydroxypyruvate reductase |
| GSS | Gga. 5371.1.S1_at | 2.10 | glutathione synthetase |
| HMGCL | Gga. 2537.1. S1_at | 2.22 | 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase |
| LIPT1 | Gga.11145.1.S1_at | 2.09 | lipoyltransferase 1 |
| NDOR1 | GgaAffx.5614.1.S1_at | 3.48 | NADPH dependent diflavin oxidoreductase 1 |
| NOX4 | GgaAffx.25209.3.S1_s_at | 2.56 | NADPH oxidase 4 |
| PFKL | Gga.2810.2.S1_at | 2.29 | phosphofructokinase, liver |
| PFKM | Gga.2810.1.S1_at | 7.17 | phosphofructokinase, muscle |
| PI4K2A | GgaAffx.3835.1.S1_at | 4.87 | phosphatidylinositol 4-kinase type 2 alpha |
| PIP5K1C | GgaAffx.515.2.S1_s_at | 4.07 | phosphatidylinositol-4-phosphate 5-kinase, type I, gamma |
| PKM2 | Gga.4299.1.S1_at | 2.09 | pyruvate kinase, muscle |
| PYGL | GgaAffx.12722.1.S1_s_at | 3.42 | liver glycogen phosphorylase |
| RRM2B | GgaAffx.10231.1.S1_at | 2.03 | ribonucleotide reductase M2 B (TP53 inducible) |
| SARDH | GgaAffx.1837.1.S1_s_at | 2.02 | sarcosine dehydrogenase |
| TPI1 | Gga.4148.1.S1_at | 2.26 | triosephosphate isomerase 1 |
| UROD | GgaAffx.6433.3.S1_s_at | 2.18 | uroporphyrinogen decarboxylase |
| Signal Transduction | |||
| BMP10 | Gga.9509.1.S1_at | 4.58 | bone morphogenetic protein 10 |
| CHRM4 | GgaAffx.5277.1.S1_at | 3.37 | cholinergic receptor, muscarinic 4 |
| DDR2 | Gga.1162.1.S1_at | 2.62 | discoidin domain receptor family, member 2 |
| EPHB3 | Gga. 3053.1. S1_at | 4.33 | EPH receptor B3 |
| FBXW4 | GgaAffx.22338.1.S1_at | 2.24 | F-box and WD repeat domain containing 4 |
| FGD3 | GgaAffx.26456.1.S1_s_at | 2.25 | FYVE, RhoGEF and PH domain containing 3 |
| FGF13 | Gga.2685.1.S2_at | 6.65 | fibroblast growth factor 13 |
| FGFR3 | Gga. 16413.1.A1_a_at | 8.42 | fibroblast growth factor receptor 3 |
| GPR88 | GgaAffx.26462.1.S1_at | 2.20 | G protein-coupled receptor 88 |
| GRK6 | Gga.19304.1.S1_s_at | 2.71 | G protein-coupled receptor kinase 6 |
| HGS | Gga.7570.1.S1_at | 2.73 | hepatocyte growth factor-regulated tyrosine kinase substrate |
| MAP2K1IP1 | Gga.4355.2.S1_s_at | 2.55 | mitogen-activated protein kinase kinase 1 interacting protein 1 |
| PPP2R2B | GgaAffx.4722.1.S1_s_at | 2.24 | protein phosphatase 2 (formerly 2A), regulatory subunit B, beta isoform |
| PRKAB2 | GgaAffx.1098.1.S1_s_at | 2.91 | protein kinase, AMP-activated, beta 2 non-catalytic subunit |
| RAP2A | GgaAffx.10815.1.S1_at | 2.33 | RAP2A, member of RAS oncogene family |
| RERG | GgaAffx.8303.1.S1_at | 2.71 | RAS-like, estrogen-regulated, growth inhibitor |
| RHOC | Gga. 17535.1.S1_at | 2.10 | ras homolog gene family, member C |
| Structural | |||
| MYL2 | Gga.839.1.S1_at | 2.27 | Myosin light chain 2 (LC2f) |
| MYL | Gga.840.2.S1_a_at | 2.28 | Myosin alkali light chain mRNA, complete cds, clone pG17-1 |
| ACTG2 | Gga.644.1.S1_at | 5.37 | actin, gamma 2, smooth muscle, enteric |
| MYL3 | Gga.4198.2.S1_a_at | 2.32 | myosin, light chain 3, alkali; ventricular, skeletal, slow |
| MYL4 | Gga.2698.1.S1_at | 3.97 | myosin, light chain 4, alkali; atrial, embryonic |
| SYNC1 | GgaAffx.2198.1.S1_at | 3.50 | syncoilin, intermediate filament 1 |
| TLN1 | Gga.4319.1.S1_at | 2.31 | talin 1 |
| TNNC2 | Gga.823.1.S1_at | 5.57 | troponin C type 2 (fast) |
| TNNT3 | Gga.4090.6.S1_a_at | 2.90 | troponin T type 3 (skeletal, fast) |
| TPM1 | Gga.4108.5.S1_x_at | 2.72 | tropomyosin 1 (alpha) |
| TPM3 | Gga.4975.1.S1_a_at | 2.35 | tropomyosin 3 |
| Transcription | |||
| BHLHB2 | GgaAffx.22522.1.S1_at | 2.34 | basic helix-loop-helix domain containing, class B, 2 |
| CBFB | Gga.17908.1.S1_s_at | 2.23 | core-binding factor, beta subunit |
| CEBPB | Gga.4285.1.S1_at | 2.05 | CCAAT/enhancer binding protein (C/EBP), beta |
| DACH1 | Gga.79.1.S1_at | 5.13 | dachshund homolog 1 (Drosophila) |
| ELK4 | GgaAffx.26765.1.S1_at | 2.70 | ELK4, ETS-domain protein (SRF accessory protein 1) |
| ETV5 | Gga.447.1.S1_at | 9.23 | ets variant gene 5 (ets-related molecule) |
| FHL2 | Gga.3108.1.S1_at | 2.80 | four and a half LIM domains 2 |
| FOXC2 | Gga.469.1.S1_at | 5.45 | forkhead box C2 (MFH-1, mesenchyme forkhead 1) |
| HES1 | Gga. 3754.2. S1_at | 2.61 | hairy and enhancer of split 1, (Drosophila) |
| HOXA10 | Gga. 10332.1.S1_at | 3.56 | Homeobox A10 |
| ID1 | Gga.892.1.S1_at | 2.64 | inhibitor of DNA binding 1, dominant negative helix-loop-helix protein |
| ID2 | Gga.3125.1.S2_at | 2.67 | inhibitor of DNA binding 2, dominant negative helix-loop-helix protein |
| IFRD1 | GgaAffx.21710.1.S1_s_at | 2.17 | interferon-related developmental regulator 1 |
| IRF10 | Gga.158.1.S1_a_at | 15.34 | interferon regulatory factor 10 |
| MED16 | GgaAffx.25352.1.S1_s_at | 2.83 | mediator complex subunit 16 |
| MITF | Gga.275.1.S1_at | 2.82 | microphthalmia-associated transcription factor |
| MIZF | Gga.7048.1.S1_at | 2.52 | MBD2-interacting zinc finger |
| NKX-6.1 | Gga.4083.1.S1_at | 2.22 | homeodomain protein |
| SOX8 | Gga.4309.1.S1_at | 2.17 | SRY (sex determining region Y)-box 8 |
| Transport | |||
| ABCA3 | GgaAffx.25344.4.S1_s_at | 2.13 | ATP-binding cassette, sub-family A (ABC1), member 3 |
| AE2 | Gga. 1335.1. S1_at | 2.20 | AE2-1 anion exchanger |
| ATP1B1 | Gga.3301.1.S1_at | 5.10 | ATPase, Na+/K+ transporting, beta 1 polypeptide |
| ATP6V0A1 | Gga. 4672.1.S1_at | 2.09 | ATPase, H+ transporting, lysosomal V0 subunit A1 |
| CACNA1G | GgaAffx.4763.7.S1_at | 2.76 | calcium channel, voltage-dependent, T type, alpha 1G subunit |
| IPO13 | GgaAffx.12959.1.S1_at | 2.15 | importin 13 |
| PITPNC1 | GgaAffx.25933.1.S1_at | 2.08 | phosphatidylinositol transfer protein, cytoplasmic 1 |
| SCAMP4 | Gga. 17554.1.S1_at | 3.10 | secretory carrier membrane protein 4 |
| SLC1A6 | GgaAffx.26346.2.S1_s_at | 2.33 | solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6 |
| SLC37A2 | GgaAffx.25722.2.S1_s _at | 6.73 | solute carrier family 37 (glycerol-3-phosphate transporter), member 2 |
| TMC6 | GgaAffx.4503.1.S1_at | 2.93 | transmembrane channel-like 6 |
| XPO5 | GgaAffx.23205.1 .S1_s_at | 3.87 | exportin 5 |