Table 4.
Genes Preferentially Expressed in Fast/Slow Myotubes
| Gene Symbol | Probe Set ID | Fold Change | Gene Title/Comments |
|---|---|---|---|
| Apoptosis | |||
| API5 | GgaAffx. 11374.1. S1_at | 2.61 | apoptosis inhibitor 5 |
| BFAR | GgaAffx. 25742.1.S1_at | 2.02 | bifunctional apoptosis regulator |
| Cell Adhesion | |||
| CD164 | Gga.7158.1.S1_at | 2.15 | CD164 molecule, sialomucin |
| CDH2 | GgaAffx.21844.1.S1_s_at | 2.08 | cadherin 2, type 1, N-cadherin (neuronal) |
| FN1 | Gga.9772.1.S1_s_at | 2.12 | fibronectin 1 |
| ITGA1 | Gga.566.1.S1_at | 3.27 | integrin, alpha 1 |
| ITGA6 | Gga.2967.1.S1_at | 4.20 | integrin, alpha 6 |
| SDC1 | Gga.6597.1.S1_at | 2.09 | syndecan 1 |
| THBS2 | GgaAffx.21822.1.S1_s_at | 2.19 | thrombospondin 2 |
| TJP1 | Gga.20045.1.S1_s_at | 2.64 | tight junction protein 1 (zona occludens 1) |
| Cell Cycle | |||
| CCAR1 | GgaAffx.11996.1.S1_s_at | 2.07 | cell division cycle and apoptosis regulator 1 |
| CCND1 | Gga.3039.1.S1_at | 2.04 | cyclin D1 |
| CENP-N | GgaAffx.8595.2.S1_s_at | 2.05 | centromere protein N |
| GSPT1 | Gga.9336.1.S1_at | 2.20 | G1 to S phase transition 1 |
| SPIN1 | Gga.4322.1.S1_at | 2.63 | spindlin 1 |
| Chromatin Remodeling | |||
| ARID1B | GgaAffx.24250.1.S1_s_at | 3.32 | AT rich interactive domain 1B (SWI1-like) |
| ATRX | GgaAffx.22386.2.S1_s_at | 3.43 | alpha thalassemia/mental retardation syndrome X-linked |
| BAZ1A | Gga.19082.1.S1_s_at | 4.11 | bromodomain adjacent to zinc finger domain, 1A |
| SMARCA1 | Gga.2597.1.S1_at | 3.29 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 |
| SMARCA5 | GgaAffx. 11920.1.S1_s_at | 2.71 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 |
| Cytoskeleton and ECM | |||
| CKAP4 | GgaAffx.8020.1.S1_at | 3.09 | cytoskeleton-associated protein 4 (p63) |
| EML4 | GgaAffx.23072.2.S1_s_at | 6.74 | echinoderm microtubule associated protein like 4 |
| NEXN | Gga.13445.1.S1_s_at | 2.36 | nexilin |
| TIMP4 | GgaAffx. 26374.1. S1_at | 2.72 | TIMP metallopeptidase inhibitor 4 |
| Metabolism | |||
| AACS | GgaAffx.1857.1.S1_s_at | 2.18 | acetoacetyl-CoA synthetase |
| AGA | GgaAffx.12577.1.S1_at | 7.58 | aspartylglucosaminidase |
| AGPS | Gga.5897.1.S1_at | 4.02 | alkylglycerone phosphate synthase |
| ALDH1L2 | GgaAffx.8040.1.S1_s_at | 2.97 | aldehyde dehydrogenase 1 family, member L2 |
| AMPD3 | GgaAffx. 26558.1. S1_at | 3.15 | adenosine monophosphate deaminase (isoform E) |
| ARSJ | GgaAffx. 23739.1. S1_at | 2.60 | arylsulfatase family, member J |
| BHMT | GgaAffx.2789.1.S1_at | 6.35 | betaine-homocysteine methyltransferase |
| CASK | Gga.7689.2.S1_x_at | 6.03 | calcium/calmodulin-dependent serine protein kinase (MAGUK family) |
| CDO1 | Gga.6921.1.S1_a_at | 2.16 | cysteine dioxygenase, type I |
| CPT1A | GgaAffx.20100.1.S1_at | 10.00 | carnitine palmitoyltransferase 1A (liver) |
| DDX21 | Gga.5656.1.S1_a_at | 2.32 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 |
| GALC | GgaAffx.6700.1.S1_s_at | 4.81 | galactosylceramidase |
| GFPT2 | GgaAffx.8765.3.S1_s_at | 2.02 | glutamine-fructose-6-phosphate transaminase 2 |
| GNPDA2 | GgaAffx.9013.1.S1_at | 2.02 | glucosamine-6-phosphate deaminase 2 |
| GNPTAB | GgaAffx.23993.3.S1_s_at | 2.02 | N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits |
| GPD1L | GgaAffx. 7282.1.S1_at | 2.39 | glycerol-3-phosphate dehydrogenase 1-like |
| GSTT1 | Gga.2437.1.S1_at | 2.90 | glutathione S-transferase theta 1 |
| IDE | GgaAffx.8525.8.S1_s_at | 3.25 | insulin-degrading enzyme |
| IDI1 | Gga.8851.2.S1_a_at | 2.27 | isopentenyl-diphosphate delta isomerase 1 |
| ME1 | Gga.1132.1.S1_at | 2.90 | malic enzyme 1, NADP(+)-dependent, cytosolic |
| PGM5 | GgaAffx.9522.1.S1_at | 4.38 | phosphoglucomutase 5 |
| SOD2 | Gga.937.1.S1_at | 6.63 | superoxide dismutase 2, mitochondrial |
| SOD3 | Gga.1128.2.S1_a_at | 3.11 | superoxide dismutase 3, extracellular |
| Signal Transduction | |||
| CALM2 /// RCJMB04_24e7 | Gga.4454.2.S1_s_at | 2.01 | calmodulin 2 (phosphorylase kinase, delta) /// calmodulin 1 (phosphorylase kinase, delta) |
| CAMK2G | Gga.17610.1.S1_at | 2.22 | calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma |
| AGTR1 | Gga.632.1.S1_at | 5.72 | angiotensin II receptor, type 1 |
| ARFGEF2 | GgaAffx.26281.3.S1_s_at | 3.30 | ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) |
| ARHGAP21 | Gga.2743.1.S1_at | 3.03 | Rho GTPase activating protein 21 |
| ASCC3 | GgaAffx.9843.1.S1_s_at | 13.31 | activating signal cointegrator 1 complex subunit 3 |
| EPHA3 | Gga.805.1.S1_at | 12.94 | EPH receptor A3 |
| EPHB1 | Gga.694.1.S1_at | 2.51 | EPH receptor B1 |
| ERBB2IP | GgaAffx.24516.2.S1_s_at | 3.09 | erbb2 interacting protein |
| GDAP2 | Gga.12508.1.S1_at | 2.63 | ganglioside induced differentiation associated protein 2 |
| GRM7 | GgaAffx. 5262.1.S1_at | 2.75 | glutamate receptor, metabotropic 7 |
| IL1R1 | Gga.846.1.S1_at | 4.50 | interleukin 1 receptor, type I |
| INPP5F | Gga. 13374.1.S1_at | 2.30 | inositol polyphosphate-5-phosphatase F |
| LTBP1 | GgaAffx.6607.2.S1_s_at | 3.32 | latent transforming growth factor beta binding protein 1 |
| MAPK9 | Gga.3651.1.S1_at | 2.63 | mitogen-activated protein kinase 9 |
| PDE3A | GgaAffx.24123.1.S1_at | 3.01 | phosphodiesterase 3A, cGMP-inhibited |
| PDGFD | Gga.9675.1.S1_at | 5.61 | platelet derived growth factor D |
| PIK3C2A | GgaAffx.26752.1.S1_s_at | 2.83 | phosphoinositide-3-kinase, class 2, alpha polypeptide |
| PIK3CA | GgaAffx. 5619.1.S1_at | 2.62 | phosphoinositide-3-kinase, catalytic, alpha polypeptide |
| PKIA | Gga.3155.1.S1_at | 2.94 | protein kinase (cAMP-dependent, catalytic) inhibitor alpha |
| PLCD1 | Gga.12980.1.S1_s_at | 2.84 | phospholipase C, delta 1 |
| PRKD3 | GgaAffx.6712.2.S1_s_at | 2.51 | protein kinase D3 |
| RCAN1 | Gga.5465.1.S1_at | 3.80 | regulator of calcineurin 1 |
| RGS9BP | Gga.9490.1.S1_at | 2.69 | regulator of G protein signaling 9 binding protein |
| SGSM2 | GgaAffx.3595.1.S1_s_at | 3.65 | small G protein signaling modulator 2 |
| TOB1 | Gga.1160.1.S1_at | 13.60 | transducer of ERBB2, 1 |
| WISP1 | Gga. 7551.1.S1_at | 3.16 | WNT1 inducible signaling pathway protein 1 |
| Structural | |||
| COL1A2 | Gga.3607.1.S1_a _at | 3.67 | collagen, type I, alpha 2 |
| DMD | Gga.718.2.S1_a_at | 2.09 | dystrophin |
| MYO1B | GgaAffx.22337.2.S1_s_at | 2.25 | myosin IB |
| MYOM3 | GgaAffx.2577.2.S1_s_at | 5.50 | myomesin family, member 3 |
| TMOD3 | GgaAffx.11704.1.S1_s_at | 2.52 | tropomodulin 3 (ubiquitous) |
| TTC8 | GgaAffx. 6738.1.S1_at | 2.68 | tetratricopeptide repeat domain 8 |
| TUBB | Gga.4579.1.S1_x_at | 4.10 | tubulin, beta |
| Transcription | |||
| BCLAF1 | GgaAffx.24308.2.S1_s_at | 2.13 | BCL2-associated transcription factor 1 |
| BRD1 | GgaAffx. 22617.1.S1_at | 2.28 | bromodomain containing 1 |
| BRMS1L | GgaAffx.11818.1.S1_s_at | 2.29 | breast cancer metastasis-suppressor 1-like |
| EBF1 | Gga.276.1.S1_at | 2.79 | early B-cell factor 1 |
| EMX2 | Gga. 7683.1.S1_at | 4.95 | empty spiracles homeobox 2 |
| EYA4 | Gga.420.1.S1_s_at | 3.19 | eyes absent homolog 4 (Drosophila) |
| EZH2 | Gga.20057.1.S1_s_at | 2.26 | enhancer of zeste homolog 2 (Drosophila) |
| FHL5 | Gga.10208.1.S1_a_at | 2.69 | four and a half LIM domains 5 |
| FOXO1A | Gga.3406.1.S1_at | 2.21 | forkhead box O1A |
| FOXO3 | Gga.19700.1.S1_at | 2.35 | forkhead box O3 |
| HOXA7 | Gga.5122.1.S1_at | 2.02 | homeobox A7 |
| HOXD8 | Gga.3187.1.S1_at | 5.80 | homeobox D8 |
| JAZF1 | Gga.7912.1.S1_at | 2.35 | JAZF zinc finger 1 |
| LHX9 | Gga.2348.1.S1_a_at | 6.63 | LIM homeobox 9 |
| MEIS2 | Gga.4046.1.S1_at | 2.91 | Meis homeobox 2 |
| MEOX2 | Gga.90.1.S1_at | 3.95 | mesenchyme homeobox 2 |
| NFATC3 | Gga.19337.1.S1_s_at | 2.14 | nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3 |
| NFIB | Gga.17307.1.S1_at | 3.92 | nuclear factor I/B |
| PITX1 | Gga.13903.1.S1_at | 3.83 | paired-like homeodomain 1 |
| PPARA | Gga.4006.2.S1_a_at | 3.03 | peroxisome proliferator-activated receptor alpha |
| PPARG | Gga.3858.2.S1_a_at | 2.16 | peroxisome proliferator-activated receptor gamma |
| R3HDM1 | GgaAffx.23837.4.S1_s_at | 2.10 | R3H domain containing 1 |
| RAB8B | Gga.13026.1.S1_at | 2.30 | RAB8B, member RAS oncogene family |
| RAI14 | Gga.12606.1.S1_s_at | 3.75 | retinoic acid induced 14 |
| RARB | Gga.2668.2.S1_at | 2.54 | retinoic acid receptor, beta |
| RREB1 | Gga.1491.1.S1_at | 2.45 | ras responsive element binding protein 1 |
| SMARCD3 | GgaAffx.8276.3.S1_s_at | 3.03 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 |
| SP3 | Gga.2337.1.S1_s_at | 2.03 | Sp3 transcription factor |
| TBPL1 | Gga.4434.1.S1_at | 2.95 | TBP-like 1 |
| TFDP1 | Gga.3952.1.S1_at | 5.16 | transcription factor Dp-1 |
| TSHZ3 | Gga.15899.1.S1_at | 3.52 | teashirt zinc finger homeobox 3 |
| YAF2 | Gga.1754.1.S1_s_at | 2.51 | YY1 associated factor 2 |
| ZEB1 | Gga.3548.1.S1_at | 2.22 | zinc finger E-box binding homeobox 1 |
| ZFHX4 | GgaAffx.9993.1.S1_at | 4.29 | zinc finger homeobox 4 |
| ZMYND11 | GgaAffx.21984.1.S1_at | 3.07 | zinc finger, MYND domain containing 11 |
| Transport | |||
| ATP6AP1 | GgaAffx.5549.1.S1_at | 2.17 | ATPase, H+ transporting, lysosomal accessory protein 1 |
| BBS5 | Gga.19986.1.S1_at | 2.13 | Bardet-Biedl syndrome 5 |
| BIN1 | GgaAffx.11745.1.S1_s_at | 2.13 | bridging integrator 1 |
| CAST | GgaAffx.9300.1.S1_at | 2.20 | calpastatin |
| COLEC12 | Gga.10960.1.S1_at | 2.82 | collectin sub-family member 12 |
| CYB5 | GgaAffx.21828.1.S1_s_at | 3.58 | cytochrome b-5 |
| FTD | Gga.20.1.S2_at | 9.22 | ferritoid |
| KPNA3 | Gga.1482.1.S1_at | 2.68 | karyopherin alpha 3 (importin alpha 4) |
| OPTN | Gga.4189.1.S1_s_at | 2.45 | optineurin |
| RBP7 | Gga.9386.1.S1_at | 3.12 | retinol binding protein 7, cellular |
| SCFD1 | GgaAffx.6231.1.S1_s_at | 2.11 | sec1 family domain containing 1 |
| SCP2 | Gga.3425.1.S1_at | 2.86 | sterol carrier protein 2 |
| SLC22A16 | GgaAffx.24590.1.S1_s_at | 5.21 | solute carrier family 22 (organic cation transporter), member 16 |
| SLC25A36 | GgaAffx.3298.1.S1_s_at | 2.56 | solute carrier family 25, member 36 |
| SLC30A1 | Gga.10012.1.S1_s_at | 2.60 | solute carrier family 30 (zinc transporter), member 1 |
| SLC45A4 | Gga.5046.1.A1_s_at | 2.30 | Solute carrier family 45, member 4 |
| SNX2 | GgaAffx. 3339.1.S1_at | 3.30 | sorting nexin 2 |
| SRP54 | Gga.1375.3.S1_s_at | 2.57 | signal recognition particle 54kDa |
| STX16 | GgaAffx.12300.1.S1_s_at | 2.05 | syntaxin 16 |
| SYTL2 | GgaAffx.8937.1.S1_at | 4.55 | synaptotagmin-like 2 |
| TMED5 | Gga.3703.1.S1_s_at | 2.14 | transmembrane emp24 protein transport domain containing 5 |