Table 6.
Genes Preferentially Expressed in Fast/Slow Myoblasts
| Gene Symbol | Probe Set ID | Fold Change | Gene Title/Comments |
|---|---|---|---|
| Cell Adhesion | |||
| ITGA1 | Gga.566.1.S1_at | 10.65 | integrin, alpha 1 |
| LAMA2 | Gga.8352.1.S1_at | 2.81 | similar to laminin alpha 2 subunit precursor; laminin M |
| RELN | Gga.496.1.S1_at | 5.44 | extracellular reelin |
| THBS2 | Gga.1686.1.S1_s_at | 2.50 | thrombospondin 2 |
| TNC | GgaAffx.26374.1.S1_at | 2.87 | tenascin |
| Cell Cycle | |||
| CCNG2 | Gga.15984.1.S1_at | 5.98 | cyclin G2 |
| CDC42 | Gga.4438.1.S1_at | 2.74 | cell division cycle 42 |
| Chromatin Remodeling | |||
| SMARCA1 | GgaAffx.4778.1.S1_s_at | 2.15 | similar to possible global transcription activator SNF2L1 |
| Cytoskeleton | |||
| DCN | Gga.1719.1.S1_at | 3.87 | decorin |
| FBLN5 | Gga.10096.1.S1_at | 3.99 | fibulin 5 |
| KRT75 | Gga.17686.1.S1_at | 6.24 | type II alpha keratin IIB |
| MAP1LC3C | Gga.3183.1.S1_a_at | 8.28 | microtubule-associated protein 1 light chain 3 gamma |
| NEFM | Gga.4179.1.S1_at | 9.43 | neurofilament 3 |
| SDC2 | Gga. 4675.1. S1_at | 2.13 | syndecan 2 |
| Metabolism | |||
| CAMK2D | GgaAffx.12207.1.S1_at | 2.39 | calcium/calmodulin-dependent protein kinase IID |
| CARS | GgaAffx.21941.1.S1_at | 4.10 | cysteinyl-tRNA synthetase |
| CDO1 | Gga.6921.1.S1_a_at | 5.14 | similar to cysteine dioxygenase |
| DPYD | GgaAffx.3458.1.S1_s_at | 6.38 | dihydropyrimidine dehydrogenase |
| DPYSL3 | Gga.9493.1.S1_at | 10.32 | dihydropyrimidinase-like 3 |
| DUSP1 | Gga.4120.1.S1_at | 2.34 | dual specificity phosphatase 1 |
| DUSP5 | Gga.19025.1.S1_at | 2.64 | dual specificity phosphatase 5 |
| FAP | GgaAffx.23453.2.S1_s_at | 3.78 | fibroblast activation protein, alpha |
| FECH | Gga.166.1.S1_at | 2.91 | ferrochelatase |
| FUT8 | GgaAffx.13151.1.S1_at | 2.91 | fucosyltransferase 8 |
| GALNTL4 | Gga.11756.1.S1_at | 10.49 | N-acetylgalactosaminyltransferase-like 4 |
| GFPT2 | GgaAffx.8765.2.S1_at | 3.05 | similar to glutamine:fructose-6-phosphate amidotransferase 2 |
| GSTK1 | Gga.14517.1.S1_s_at | 3.26 | glutathione S-transferase kappa 1 |
| GSTT1 | Gga. 2437.1. S1_at | 2.76 | glutathione S-transferase theta 1 |
| HAS2 | Gga.329.1.S1_at | 2.44 | hyaluronan synthase 2 |
| LYCAT | Gga.7898.1.S1_at | 4.02 | lysocardiolipin acyltransferase |
| MAN2C1 | GgaAffx.1059.1.S1_s_at | 2.05 | similar to alpha-mannosidase 2C1 |
| ME1 | Gga.1132.1.S1_at | 3.32 | malic enzyme 1, NADP(+)-dependent, cytosolic |
| MOXD1 | Gga.969.1.S1_at | 2.43 | monooxygenase, DBH-like 1 |
| MTRR | GgaAffx.24101.1.S1_at | 2.04 | similar to methionine synthase reductase isoform 2 |
| PAPSS1 | GgaAffx.23250.1.S1_s_at | 2.07 | 3′-phosphoadenosine 5′-phosphosufate synthase 1 |
| PGM5 | GgaAffx.9522.1.S1_at | 3.55 | similar to phosphoglucomutase 5 |
| PLK2 | Gga.10660.2.S1_at | 2.21 | similar to polo-like kinase 2 |
| PPAP2B | GgaAffx.23330.1.S1_at | 4.09 | similar to phosphatidic acid phosphatase type 2B |
| SOD2 | Gga.4220.1.S1_a_at | 3.22 | superoxide dismutase 2, mitochondrial |
| SOD3 | Gga.19934.1.S1_at | 3.03 | superoxide dismutase 3, extracellular |
| SULT1B1 | Gga.735.1.S1_at | 4.44 | sulfotransferase family, cytosolic, 1B, member 1 |
| UPP1 | Gga.18724.1 .S1_s_at | 3.71 | uridine phosphorylase 1 |
| Signal Transduction | |||
| CXCL14 | GgaAffx.21581.1.S1_s_at | 4.66 | chemokine ligand 14 |
| DGKH | GgaAffx.10860.2.S1_s_at | 2.16 | similar to A-kinase anchor protein 11 |
| DKK1 | Gga.897.1.S1_at | 4.03 | Dikkopf homolog 1 |
| EPHA3 | Gga.805.1.S1_at | 22.05 | EPH receptor A3 |
| FGF3 | Gga.2701.1.S1_at | 4.25 | fibroblast growth factor 3 |
| FGF4 | GgaAffx.4716.1.S1_at | 49.16 | fibroblast growth factor 4 |
| GTPBP4 | Gga.9844.1.S1_s_at | 2.49 | GTP binding protein 4 |
| IGF2R | Gga.3597.1.S1_at | 2.08 | insulin-like growth factor 2 receptor |
| IGFBP2 | Gga.759.1.S1_at | 3.13 | insulin-like growth factor receptor binding protein 2 |
| IGFBP5 | Gga. 9364.1.S1_at | 4.19 | insulin-like growth factor binding protein 5 |
| IL6 | Gga.2769.1.S1_at | 2.07 | interleukin 6 |
| IL8 | Gga.826.1.S1_s_at | 3.87 | interleukin 8 |
| LSP1 | Gga.16589.1.S1_at | 10.23 | lymphocyte-specific protein 1 |
| LTBP1 | GgaAffx.6607.2.S1_s_at | 2.65 | similar to latent transforming growth factor beta binding protein 1 |
| MAPK13 | GgaAffx.549.1.S1_at | 2.58 | mitogen-activated protein kinase 14 |
| NRG1 | Gga.135.3.S1_a_at | 8.07 | neuregulin 1 |
| PDE3A | GgaAffx.24123.1.S1_at | 4.09 | similar to cyclic nucleotide phosphodiesterase PDE3A |
| PDGFD | Gga. 9675.1.S1_at | 4.07 | platelet derived growth factor D |
| PPP2R3A | GgaAffx.23502.1.S1_at | 2.86 | similar to alpha isoform of regulatory subunit B, protein phosphatase 2, isoform 1 |
| RHOJ | Gga.12598.1.S1_at | 3.05 | ras homolog gene family, member J |
| SH3BGR | Gga.11787.2.S1_s_at | 3.38 | SH3 domain binding glutamic acid-rich protein |
| TGFB3 | GgaAffx.21766.1.S1_s_at | 2.86 | transforming growth factor beta 3 |
| VEGFC | Gga.10930.1.S1_at | 2.11 | similar to vascular endothelial growth factor C |
| WNT9A | GgaAffx.21279.1.S1_at | 2.99 | wingless-type MMTV integration site family , member 9A |
| ZIC1 | Gga.11492.1.S1_at | 2.84 | zic family member 1 |
| Structural | |||
| ACTA1 | Gga. 5962.1.S1_at | 2.32 | A-actin |
| ACTN2 | Gga.4843.2.S1_a_at | 4.36 | actinin, alpha 2 |
| MYH6 | Gga. 2617.1. S1_at | 3.06 | myosin, heavy polypeptide 6 |
| MYL3 | Gga.4198.2.S1_a_at | 3.16 | myosin, light polypeptide 3, alkali; skeletal slow |
| MYOM2 | Gga.4216.1.S1_at | 9.40 | myomesin (M-protein) 2 |
| SHROOM3 | Gga.15872.1.S1_s_at | 2.48 | similar to shroom-related protein |
| TNNC2 | Gga. 1722.1.S1_at | 2.42 | troponin C type 2 |
| TNNI1 | Gga.3818.1.S1_at | 2.27 | troponin I type 1 |
| Transcription | |||
| EBF1 | Gga.276.2.S1_a_at | 12.03 | early B-cell factor 1 |
| EMX2 | Gga. 7683.1. S1_at | 5.35 | empty spiracles homolog 2 |
| EYA2 | Gga.1839.1.S1_at | 3.75 | eyes absent homolog 2 |
| EYA4 | GgaAffx.24324.1.S1_at | 12.58 | eyes absent homolog 4 |
| FOXO1A | Gga. 3406.1. S1_at | 2.49 | forkhead box 01A |
| FOXP2 | GgaAffx.5942.1.S1_at | 33.57 | forkhead box P2 |
| HEY2 | GgaAffx.9430.1.S1_at | 2.26 | similar to hairy/enhancer-of-split related |
| HOXD8 | Gga.3187.1.S1_at | 6.63 | homeobox D8 |
| ID4 | Gga.2070.2.S1_a_at | 3.54 | inhibitor of DNA binding 4 |
| KLF3 | Gga. 12232.1.S1_at | 2.33 | Krüppel-like factor 3 |
| LHX9 | Gga.2348.1.S1_a_at | 10.27 | LIM homeobox 9 |
| MEOX2 | Gga.90.1.S1_at | 16.35 | mesenchme homeobox 2 |
| NFE2L2 | Gga. 3659.1. S1_at | 2.05 | nuclear factor (erythroid-derived 2)-like 2 |
| NFIB | Gga.17307.1.S1_at | 3.49 | nuclear factor I/B |
| PPARA | Gga.4006.1.S1_at | 2.46 | peroxisome proliferative activated receptor, alpha |
| PRRX1 | Gga. 1546.1. S1_at | 5.35 | paired related homeobox 1 |
| SOX4 | Gga.937.1.S1_at | 2.24 | SRY (sex determining region Y)-box 4 |
| Transport | |||
| ATP6V0D1 | Gga.7507.1.S1_at | 2.06 | ATPase, H+ transporting |
| ATP6V1G1 | Gga.4824.1.S1_at | 10.86 | similar to ATP6V1G1-prov protein |
| CYB5A | GgaAffx.21828.1.S1_s_at | 2.26 | cytochrome B-5 |
| FABP4 | Gga.4939.1.S1_s_at | 20.36 | fatty acid binding protein 4 |
| FTD | Gga.20.1.S2_at | 3.29 | ferritoid |
| NXT2 | GgaAffx.11867.1.S1_s_at | 2.49 | nuclear transport factor 2-like export factor 2 |
| ORMDL1 | GgaAffx.25485.1.S1_at | 2.32 | solute carrier family 40 (iron-regulated transporter), member 1 |
| RBP4 | Gga.4126.1.S1_at | 2.28 | retinol binding protein 4, plasma |
| RBP7 | Gga.9386.1.S1_at | 3.97 | retinol binding protein 7, cellular |