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. 2013 Sep 5;4:317. doi: 10.3389/fpls.2013.00317

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Copyright © 2013 Reinprecht, Yadegari, Perry, Siddiqua, Wright, McClean and Pauls.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Phenylpropanoid pathway gene sequence-based common bean-soybean comparative map. Marker and phenylpropanoid pathway gene names (abbreviated plus accession number) are shown on right of each chromosome. Feature position [bp, start nt shown (Phytozome)] is indicated on left of each chromosome. Syntenic fragments of soybean chromosomes (each in different color) are shown on left (copy “1”) and right (copy “2”) of common bean chromosome (black). Phenylpropanoid pathway gene fragments cloned in this study are shown in red, bold, and underlined. Tentative positions of seed coat color genes are shown in black blocks. Enzyme abbreviations: PAL, phenylalanine ammonia lyase; C4H, cinnamate 4-hydroxylase; 4CL, 4-coumarate:CoA ligase; C3H, 4-coumarate 3-hydroxylase; COMT, caffeate O-methyltransferase; F5H, ferulic acid 5-hydroxylase; CCoOMT, caffeoyl CoA O-methyltransferase; CCR, cinnamoyl CoA-reductase; HCT, hydroxycinnamoyl-CoA: shikimate/guinate hydroxycinnamoyltransferase; CAD, cinnamyl alcohol dehydrogenase; LAC, laccase; PER, lignin peroxydase; PLR, pinoresinol/lariciresinol reductase; DP, dirigent protein; STS, stilbene synthase; CHS, chalcone synthase; CHI, chalcone isomerase; FNS, flavone synthase; F3H, flavanone 3-hydroxylase; F3′H, flavonoid 3′-hydroxylase; F3′5′H, flavonoid 3′5′-hydroxylase; FLS, flavonol synthase; DFR, dihydroflavanol 4-reductase; ANS (LDOX), anthocyanidin synthase; UF3GT, UDP glucose flavonoid 3-O-glucosyltransferase; 3RT, anthocyanidin-3-glucoside rhamnosyl transferase; AAT, anthocyanin 5-aromatic acyltransferase; AMT, anthocyanin methyltransferase; GST, glutathione S-transferase; VT, vacuolar transporter; LAR, leucoanthocyanidin reductase; ANR, anthocyanidin 4-reductase; PPO, polyphenol oxidase; CHR, chalcone reductase; IFS, 2-hydroxyisoflavanone synthase; HIDH, 2-hydroxyisoflavanone dehydratase; 7IOMT, isoflavone 7-O-methyltransferase; I2′H, isoflavone 2′-hydroxylase; IFR, isoflavanone reductase; F6H, flavonoid 6-hydroxylase; HI4′OMT, isoflavone 4-O-methyltransferase; IF7MaT, isoflavone 7-O-methyltransferase; VR, vestitone reductase; DMID, dihydroxy-methoxy-isoflavanol dehydratase; G4DT, pterocarpan 4-dimethylallyltransferase; PTS, pterocarpan synthase.