Table 6.
Genome location of common bean seed coat color and pattern genes.
| Common bean | Soybean synteny | ||||||
|---|---|---|---|---|---|---|---|
| Gene | Phenotype | Genome location | |||||
| Chromosome | Closest marker(s) | Nearest phenylpropanoid pathway gene(s) | |||||
| Color | P | Ground factor | Pv7 | g487-BM210 | Myb15-CW652102/PAL2-P19142-1 | Gm20/Gm13 | Gm10 |
| C | Complete color | Pv8 | C-OAP2700-Fa | HD-CV670753; VR-EU925557/GST1-AY220095 | Gm18 | Gm07 | |
| J (=L) | Mature color development | NA | NAb | NA | NA | NA | |
| G | Yellow brown | Pv4 | BM140-g2595 | A3OGT-BE190894/CHR-CW652099 | Gm09 | Gm16 | |
| B | Gray brown | Pv2 | g364-g656 | NAD(REF1)-NM_113359-2/- | Gm08 | Gm05 | |
| V | Violet | Pv6 | V-OD12800-Ra | F3′5′-AY117551/F6H-XM_003551443 | Gm18 | Gm13 W1-F3′5′H | |
| Rk | No color expression | Pv2 | g2540-g1194 | CAD-CV670740/MycA-EW678711/DP-BE806864 | Gm08 I—CHS, O—ANR | Gm05 | |
| Pattern | T | Totally colored | Pv9 | T-OM19400-Fa | COMT-CV670741; PTR-TC433083/LIM-BU764417 | Gm06 T-F3′H | Gm04 |
| Z (=D) | Zonal | Pv3 | g125-g1925 | 4CL1-AF279267-1; FOGT-Glyma13g01220/Myb176-FJ550209 | Gm17 Gm02-Wp-F3H | Gm13/Gm05 | |
| Bip | Bipunctata | Pv10 | Bip-OJ17700-Ra | Myb11-NM_116126/- | Gm03/Gm19 | Gm07 | |
| Ana | Anasazi | Pv10 | Ana-OM9200-Ra | – | Gm07 | Gm03 | |
| Gy | Greenish-yellow | Pv8 | Gy-OW17600-Ra | MybA-Glyma09g36990-1b/HD-CA902455 | Gm18 | Gm9 R | |
a
Markers associated with the seed coat color/pattern genes (McClean et al., 2002).
b
not available.