Table 3.
A. Unadjusted Results
| ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Chromosome | SNP | Position | A1 | A2 | MAF** | Missing count | Hardy-Weinberg equilibrium P | Location of SNP to the nearest gene | Nearest Gene | p-value* |
3 | rs9810233 | 106493580 | G | A | 0.270 | 1 | 0.725 | flanking_5UTR | ALCAM | 6.98E-07 |
3 | rs1920201 | 106518787 | G | T | 0.245 | 5 | 0.653 | flanking_5UTR | ALCAM | 8.60E-07 |
2 | rs836589 | 173201324 | A | G | 0.186 | 8 | 0.521 | flanking_3UTR | PDK1 | 1.63E-06 |
3 | rs1438552 | 106545285 | G | A | 0.247 | 2 | 0.603 | flanking_5UTR | ALCAM | 1.72E-06 |
6 | rs6931865 | 144121547 | A | G | 0.336 | 1 | 0.901 | intron | PHACTR2 | 3.57E-06 |
3 | rs950146 | 36655103 | C | A | 0.491 | 5 | 0.698 | flanking_3UTR | STAC | 4.32E-06 |
3 | rs9850224 | 142057977 | A | G | 0.010 | 1 | 1 | flanking_5UTR | SLC25A36 | 4.80E-06 |
1 | rs2990510 | 195287281 | G | T | 0.305 | 0 | 0.556 | intron | F13B | 5.89E-06 |
1 | rs10754210 | 195278734 | A | G | 0.304 | 1 | 0.513 | intron | F13B | 5.89E-06 |
2 | rs7566884 | 173189446 | G | A | 0.177 | 1 | 0.393 | flanking_3UTR | PDK1 | 6.39E-06 |
1 | rs4520444 | 195408611 | T | G | 0.296 | 5 | 0.842 | intron | ZBTB41 | 7.77E-06 |
1 | rs5998 | 195276421 | G | A | 0.454 | 0 | 0.696 | coding | F13B | 8.30E-06 |
1 | rs7518773 | 195278259 | G | A | 0.453 | 2 | 0.615 | intron | F13B | 8.30E-06 |
1 | rs1332668 | 195272359 | T | C | 0.455 | 1 | 0.655 | flanking_3UTR | F13B | 8.50E-06 |
B. Multivariate
Results*
| ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Chrom | SNP | Position | A1 | A2 | MAF# | missing | Hardy- Weinberg equilibrium P | Location of SNP to nearest gene | Nearest Gene | Model | OR | 95% CI | p-value | |
3 | rs9810233 | 106493580 | G | A | 0.270 | 1 | 0.725 | flanking_5UTR | ALCAM | M1 | 2.32 | 1.67 | 3.22 | 5.93E-07 |
3 | rs1920201 | 106518787 | G | T | 0.245 | 5 | 0.653 | flanking_5UTR | ALCAM | M1 | 2.26 | 1.63 | 3.14 | 9.39E-07 |
6 | rs6931865 | 144121547 | A | G | 0.336 | 1 | 0.901 | intron | PHACTR2 | M1 | 2.02 | 1.50 | 2.74 | 4.85E-06 |
3 | rs950146 | 36655103 | C | A | 0.491 | 5 | 0.698 | flanking_3UTR | STAC | M1 | 0.48 | 0.35 | 0.66 | 4.77E-06 |
2 | rs836589 | 173201324 | A | G | 0.186 | 8 | 0.521 | flanking_3UTR | PDK1 | M1 | 2.27 | 1.58 | 3.25 | 8.29E-06 |
3 | rs950146 | 36655103 | C | A | 0.491 | 5 | 0.698 | flanking_3UTR | STAC | M2 | 0.46 | 0.33 | 0.64 | 6.52E-06 |
6 | rs6931865 | 144121547 | A | G | 0.336 | 1 | 0.901 | intron | PHACTR2 | M2 | 2.48 | 1.73 | 3.54 | 6.89E-07 |
Fishers exact test.
Minor Allele Frequency A1 is the minor allele.
All models run with additive tests for significance in PLINK with covariates.
Adjusting for cohort, treatment, cohort*treatment. (M1)
Adjusting for cohort, treatment, cohort*treatment, diabetes duration, age, initial HgbA1c at eligibility. (M2)
Minor Allele Frequency