Table 4.
List of candidate genes in rice collinear regions with a 4-fold change in transcript levels in response to powdery mildew
| Chr | Marker interval wheat | Locus interval rice | Rice locus | BLASTX best hit | Putative function | E value |
|---|---|---|---|---|---|---|
| 3A |
Xbcd22-Xbcd372 |
Os01g47540 (Os01g0665300)-Os01g67800 |
Os01g48610 (Os01g0677900) |
NP_001043854 |
unknown |
0.00E + 00 |
| Os01g50100 (Os01g0695800) |
CAD59587 |
MDR-like ABC transporter |
0.00E + 00 |
|||
| Os01g50420 (Os01g0699600) |
ACH99698 |
NPKL4 |
0.00E + 00 |
|||
| Os01g51670 (Os01g0714600) |
NP_001044058 |
unknown |
1.00E-98 |
|||
| Os01g53920 (Os01g0742400) |
BAD87898 |
putative LRK1 protein |
0.00E + 00 |
|||
| Os01g55560 (Os01g0760900) |
Q5JMF2 |
Abl interactor-like protein 5 |
0.00E + 00 |
|||
| Os01g55974 (Os01g0765000) |
BAD87146 |
deoxycytidylate deaminase-like |
7.00E-164 |
|||
| Os01g56560 (Os01g0772400) |
EAY75988 |
putative coenzyme Q binding site |
2.00E-133 |
|||
| Os01g57730 (Os01g0787000) |
BAB90103 |
putative peroxidase |
0.00E + 00 |
|||
| Os01g58170 |
BAD53004 |
S-adenosylmethionine-dependent methyltransferase |
7.00E-35 |
|||
| Os01g60730 (Os01g0822800) |
BAB86495 |
putative RING-H2 zinc finger protein |
2.00E-60 |
|||
| Os01g62430 (Os01g0841700) |
Q0JHU5 |
Elicitor-responsive protein 1 |
5.00E-105 |
|||
| Os01g63380 (Os01g0852650) |
EAZ14299 |
MULE transposase domain |
0.00E + 00 |
|||
| Os01g63920 |
BAD82052 |
unknown |
9.00E-74 |
|||
| 2B |
wPt-2120-Xcdo244 |
Os04g22100-Os04g59494 (Os04g0691500) |
Os04g30670 |
ADB85432 |
putative retrotransposon protein |
1.00E-05 |
| Os04g34540 (Os04g0422700) |
EAY94121 |
hypothetical protein |
5.00E-30 |
|||
| Os04g27020 |
NP_001052496 |
Cytochrome P450 family protein |
0.00E + 00 |
|||
| Os04g28140 |
CAE02105 |
unknown |
4.00E-93 |
|||
| Os04g47400 (Os04g0561900) |
NP_001053555 |
unknown |
0.00E + 00 |
|||
| Os04g47650 (Os04g0564100) |
EAZ41424 |
Peptidase S9A |
3.00E-05 |
|||
| Os04g38930 (Os04g0463300) |
CAE76009 |
PPR repeat family |
0.00E + 00 |
|||
| Os04g39350 (Os04g0469000) |
NP_001053041 |
unknown |
5.00E-46 |
|||
| Os04g53998 (Os04g0632100) |
NP_001053986 |
S-locus receptor-like kinase RLK13 |
0.00E + 00 |
|||
| Os04g57570 |
AAO37957 |
putative gag-pol polyprotein |
0.00E + 00 |
|||
| 4B |
Xbcd110-wPt-9223 |
Os03g04410 (Os03g0136900)- Os03g16310 |
Os03g01740 (Os03g0107700) |
Q10SY2 |
Cyclin-dependent protein kinase inhibitor EL2 |
3.00E-54 |
| Os03g03034 (Os03g0122300) |
ABF93706 |
2OG-Fe oxygenase family protein |
0.00E + 00 |
|||
| Os03g07880 (Os03g0174900) |
ABF94255 |
CCAAT-Binding transcription Factor |
7.00E-161 |
|||
| Os03g10100 (Os03g0197200) |
EEE58504 |
Sugar transporter family protein |
0.00E + 00 |
|||
| Os03g11690 (Os03g0216300) |
EEC74765 |
PPR repeat family |
0.00E + 00 |
|||
| Os03g10600 (Os03g0203100) |
EEE58531 |
Urb2/Npa2 pre-60S ribosomal particles family |
0.00E + 00 |
|||
| Os03g15320 (Os03g0258900) |
ABF95066 |
glyoxal oxidase |
0.00E + 00 |
|||
| 5B | - | Os09g01690 (Os09g0104300)-Os09g38790 (Os09g0560900) | Os09g10550 |
NP_001175748 |
Ulp1 protease family |
4.00E-143 |
| Os09g11480 (Os09g0287000) |
BAD29670 |
ethylene responsive AP2/ERF domain protein |
1.00E-73 |
|||
| Os09g21620 (Os09g0384300) |
BAD25962 |
F-box-like protein |
0.00E + 00 |
|||
| Os09g23610 (Os09g0400900) |
BAD28514 |
unknown |
3.00E-30 |
|||
| Os09g25520 |
BAD33414 |
unknown |
0.00E + 00 |
|||
| Os09g29710 (Os09g0472900) |
NP_001063448 |
Blight-associated protein p12 precursor |
1.00E-70 |
|||
| Os09g31019 (Os09g0483200) |
NP_001063507 |
Ribosomal L40e family |
3.00E-82 |
|||
| Os09g32360 (Os09g0499400) |
BAF25485 |
unknown |
0.00E + 00 |
|||
| Os09g39080 (Os09g0564200) | EAZ45686 | unknown | 3.00E-39 |
Chr chromosome.