Table 2.
Statistical analysis on the digital expressions of the exons in different classes
|
Sample |
Constitutive exons |
Cassette exons |
Annotated TE exons |
Un-annotated TE exons |
||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| R | M | p | R | M | p | R | M | p | R | M | p | |
| BT20 |
0.03 |
0.98 |
1.72E-36 |
0.07 |
0.91 |
3.11E-29 |
0.26 |
0.38 |
4.28E-20 |
0.51 |
0.07 |
7 7.43E-20 |
| MDAMB231 |
0.05 |
0.98 |
1.89E-49 |
0.09 |
0.9 |
4.67E-28 |
0.33 |
0.42 |
2.20E-19 |
0.6 |
0.07 |
7.65E-16 |
| MDAMB468 |
0.04 |
0.99 |
4.64E-69 |
0.08 |
0.9 |
9.92E-33 |
0.28 |
0.36 |
8.99E-23 |
0.58 |
0.07 |
3.54E-12 |
| MCF7 |
0.03 |
0.99 |
8.91E-64 |
0.07 |
0.89 |
1.75E-34 |
0.3 |
0.31 |
2.54E-12 |
0.48 |
0.07 |
1.45E-20 |
| BT474 |
0.03 |
0.99 |
3.81E-62 |
0.08 |
0.9 |
4.31E-34 |
0.36 |
0.35 |
6.87E-13 |
0.53 |
0.07 |
1.22E-12 |
| T47D |
0.04 |
0.98 |
4.33E-26 |
0.08 |
0.92 |
5.72E-34 |
0.2 |
0.35 |
3.00E-31 |
0.58 |
0.06 |
7.08E-16 |
| ZR751 |
0.04 |
0.99 |
7.93E-58 |
0.08 |
0.9 |
1.06E-31 |
0.29 |
0.3 |
3.26E-19 |
0.6 |
0.07 |
6.88E-10 |
| MCF10A |
0.04 |
0.99 |
2.00E-72 |
0.09 |
0.89 |
2.26E-31 |
0.28 |
0.36 |
8.59E-26 |
0.6 |
0.06 |
4.63E-14 |
| LNCaP |
0.09 |
0.99 |
4.16E-91 |
0.16 |
0.88 |
6.58E-23 |
0.39 |
0.38 |
2.99E-21 |
0.7 |
0.08 |
4.12E-05 |
| PrEC |
0.08 |
0.99 |
1.18E-121 |
0.15 |
0.86 |
7.20E-28 |
0.49 |
0.33 |
2.55E-11 |
0.7 |
0.08 |
6.84E-05 |
| LCLs |
0.02 |
0.99 |
2.92E-136 |
0.06 |
0.86 |
9.98E-35 |
0.18 |
0.3 |
3.05E-24 |
0.45 |
0.06 |
1.00E-15 |
| OV-1-pr |
0.02 |
0.98 |
9.29E-50 |
0.05 |
0.91 |
4.59E-43 |
0.23 |
0.29 |
3.65E-15 |
0.39 |
0.08 |
1.17E-07 |
| OV-1-re |
0.03 |
1 |
2.53E-188 |
0.06 |
0.84 |
1.32E-36 |
0.17 |
0.3 |
6.77E-19 |
0.39 |
0.08 |
3.36E-06 |
| OV-2-fi |
0.02 |
0.99 |
1.29E-153 |
0.05 |
0.86 |
3.86E-35 |
0.17 |
0.34 |
6.15E-16 |
0.29 |
0.11 |
8.54E-07 |
| OV-2-se |
0.02 |
0.99 |
8.43E-77 |
0.04 |
0.89 |
6.42E-46 |
0.2 |
0.3 |
2.13E-13 |
0.31 |
0.09 |
4.55E-07 |
| OV-3-pr |
0.03 |
0.99 |
2.01E-162 |
0.07 |
0.84 |
7.23E-42 |
0.35 |
0.23 |
2.60E-08 |
0.47 |
0.1 |
1.19E-01 |
| OV-3-re |
0.02 |
0.99 |
2.39E-109 |
0.05 |
0.87 |
1.84E-40 |
0.17 |
0.27 |
1.51E-16 |
0.4 |
0.08 |
4.65E-07 |
| prAd_1 |
0.14 |
1 |
1.24E-256 |
0.25 |
0.71 |
1.82E-14 |
0.57 |
0.28 |
2.43E-12 |
0.81 |
0.05 |
2.42E-01 |
| prAd_2 |
0.12 |
1.01 |
7.82E-292 |
0.22 |
0.72 |
6.88E-17 |
0.6 |
0.3 |
7.12E-10 |
0.79 |
0.05 |
2.50E-01 |
| prAd_3 |
0.07 |
1.02 |
0.00E + 00 |
0.16 |
0.71 |
3.15E-19 |
0.46 |
0.27 |
7.33E-13 |
0.7 |
0.05 |
1.83E-02 |
| prNorm_1 |
0.07 |
0.99 |
7.83E-170 |
0.13 |
0.83 |
2.49E-34 |
0.42 |
0.3 |
1.35E-17 |
0.68 |
0.06 |
2.23E-06 |
| prNorm_2 |
0.07 |
0.99 |
1.41E-172 |
0.12 |
0.83 |
2.33E-26 |
0.4 |
0.33 |
1.39E-14 |
0.65 |
0.07 |
2.01E-05 |
| prNorm_3 |
0.13 |
1.01 |
5.47E-288 |
0.23 |
0.74 |
7.63E-16 |
0.55 |
0.35 |
3.49E-12 |
0.78 |
0.06 |
7.63E-02 |
| Brain |
0.04 |
0.99 |
6.99E-183 |
0.09 |
0.84 |
5.03E-26 |
0.31 |
0.31 |
1.70E-13 |
0.54 |
0.08 |
1.30E-09 |
| Liver | 0.08 | 1 | 8.84E-124 | 0.15 | 0.85 | 5.08E-28 | 0.52 | 0.26 | 1.19E-06 | 0.68 | 0.09 | 1.67E-01 |
R: the proportion of exons with no reads mapped to the genomic regions in the alignment among the entire set of exons in the corresponding categories. M: the average of the rescaled RPKMs. p: the p-values for stepwise comparisons (see Results section for details).