Table 1.
Study | Disorder | Source of samples | BP | CTRL | Brain region/RNA source | Genome-wide array platform | Total probesets | Probesets after P/A filter | After gene mapping |
Included in mega-analysis |
||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Any brain region | Prefrontal cortex | Hippocampus | ||||||||||
aAltar A. et al. |
BP, SCZ |
SMRI(A) |
32 |
34 |
FrontalBA46 |
hgu133a |
22283 |
15023 |
8962 |
YES |
YES |
- |
Bahn et al. |
BP |
SMRI(A) |
32 |
33 |
FrontalBA46 |
hgu133a |
22283 |
15595 |
9214 |
YES |
YES |
- |
bT. Kato et al. |
BP, SCZ |
SMRI(A) |
33 |
34 |
FrontalBA46 |
hgu133a |
22283 |
15972 |
9418 |
YES |
YES |
- |
cDobrin et al. |
BP, SCZ |
SMRI(A) |
27 |
25 |
FrontalBA46 |
hgu133p |
54675 |
40605 |
15995 |
YES |
YES |
- |
Laeng et al. |
BP, SCZ |
SMRI(A) |
20 |
21 |
Hippocampus CA1 |
hgu133p |
54675 |
29854 |
13459 |
YES |
- |
YES |
Chen et al. |
BP, SCZ |
SMRI(C) |
14 |
13 |
FrontalBA46 |
hgu133p |
54675 |
29854 |
12864 |
YES |
YES |
- |
dKemether et al. |
BP, MD, SCZ |
SMRI(C) |
11 |
12 |
Thalamus MD |
hgu133p |
54675 |
30201 |
13464 |
YES |
- |
- |
Harvard_collection |
BP, SCZ |
HBTRC |
19 |
26 |
Frontal McL66 |
hgu133a |
22283 |
15105 |
9021 |
YES |
YES |
- |
Harvard_collection |
BP, SCZ |
HBTRC |
15 |
21 |
Cingulate Cortex |
hgu133a |
22283 |
15264 |
8993 |
YES |
- |
- |
Harvard_collection | BP, SCZ | HBTRC | 8 | 10 | Hippocampus | hgu95av2 | 12625 | no filter | 8438 | - | - | YES |
Number of outlier samples excluded from each study, a = 5, b = 2, c = 8, d = 1.
HBTRC – Harvard Brain Tissue Resource Center (McLean Hospital, Belmont, Massachusetts).
SMRI (A/C) - Stanley Medical Research Institute/Stanley Foundation (Array Collection/Neuropathology Collection).