Table 3.
Statistics of DGE sequencing
| Summary | CK | JA | MeJA | |
|---|---|---|---|---|
| Raw Data |
Total |
3508779 |
5959646 |
3508306 |
| Raw Data |
Distinct Tag |
252431 |
405541 |
302418 |
| Clean Tag |
Total number |
3366354 |
5682475 |
3308622 |
| Clean Tag |
Distinct Tag number |
114240 |
140268 |
107570 |
| All Tag Mapping to Gene |
Total number |
1215015 |
1915314 |
1179280 |
| All Tag Mapping to Gene |
Total % of clean tag |
36.09% |
33.71% |
35.64% |
| All Tag Mapping to Gene |
Distinct Tag number |
47520 |
51376 |
38662 |
| All Tag Mapping to Gene |
Distinct Tag % of clean tag |
41.60% |
36.63% |
35.94% |
| Unambiguous Tag Mapping to Gene |
Total number |
1202951 |
1900711 |
1166300 |
| Unambiguous Tag Mapping to Gene |
Total % of clean tag |
35.73% |
33.45% |
35.25% |
| Unambiguous Tag Mapping to Gene |
Distinct Tag number |
47135 |
50986 |
38356 |
| Unambiguous Tag Mapping to Gene |
Distinct Tag % of clean tag |
41.26% |
36.35% |
35.66% |
| All Tag-mapped Genes |
number |
19443 |
20411 |
17544 |
| All Tag-mapped Genes |
% of ref genes |
37.36% |
39.22% |
33.71% |
| Unambiguous Tag-mapped Genes |
number |
19153 |
20114 |
17285 |
| Unambiguous Tag-mapped Genes |
% of ref genes |
36.80% |
38.65% |
33.21% |
| Unknown Tag |
Total number |
2151339 |
3767161 |
2129342 |
| Unknown Tag |
Total % of clean tag |
63.91% |
66.29% |
64.36% |
| Unknown Tag |
Distinct Tag number |
66720 |
88892 |
68908 |
| Unknown Tag | Distinct Tag % of clean tag | 58.40% | 63.37% | 64.06% |
CK Control Check, JA jasmonic acid, MeJA methyl jasmonate.