Table 2.
Statistics of RNA sites, regulogs and target genes in the analyzed genomes
| Phylum / subdivision | Taxonomic group | Genomes | Sites | Sites per genome* | Regulogs | Target genes | Genes per genome* |
|---|---|---|---|---|---|---|---|
|
Firmicutes |
Lactobacillaceae |
15 |
581 |
39 |
39 |
1074 |
72 |
| |
Streptococcaceae |
15 |
400 |
27 |
29 |
881 |
59 |
| |
Bacillales |
11 |
668 |
61 |
39 |
1525 |
139 |
| |
Staphylococcaceae |
7 |
288 |
41 |
30 |
647 |
92 |
| |
Clostridiaceae |
20 |
958 |
48 |
40 |
2036 |
102 |
|
Bacteroidae |
Bacteroidaceae |
11 |
84 |
7.6 |
2 |
334 |
30 |
|
Chlorobia |
Chlorobiales |
11 |
73 |
6.6 |
6 |
263 |
24 |
|
Actinobacteria |
Corynebacteriaceae |
8 |
80 |
10 |
13 |
194 |
24 |
| |
Mycobacteriaceae |
9 |
131 |
15 |
12 |
247 |
27 |
|
Cyanobacteria |
Cyanobacteria |
14 |
86 |
6.1 |
11 |
150 |
11 |
|
Chloroflexi |
Chloroflexi |
5 |
98 |
20 |
17 |
300 |
60 |
|
Deinococcus-Thermus |
Deinococcus-Thermus |
5 |
64 |
13 |
13 |
221 |
44 |
|
Thermotogae |
Thermotogales |
11 |
88 |
8.0 |
13 |
379 |
34 |
|
Proteobacteria/Delta |
Desulfovibrionales |
10 |
78 |
7.8 |
9 |
159 |
16 |
|
Proteobacteria/Alpha |
Caulobacterales |
4 |
36 |
9.0 |
8 |
70 |
18 |
| |
Rhodobacterales |
15 |
182 |
12 |
13 |
443 |
30 |
| |
Rhizobiales |
15 |
221 |
15 |
11 |
486 |
32 |
|
Proteobacteria/Beta |
Burkholderia |
8 |
127 |
16 |
9 |
319 |
40 |
| |
Ralstonia |
6 |
66 |
11 |
10 |
173 |
29 |
|
Proteobacteria/Gamma |
Enterobacteriales |
12 |
188 |
16 |
18 |
601 |
50 |
| |
Pasteurellales |
9 |
112 |
12 |
11 |
258 |
29 |
| |
Vibrionales |
10 |
202 |
20 |
17 |
533 |
53 |
| |
Pseudomonadaceae |
8 |
92 |
12 |
9 |
248 |
31 |
| |
Shewanellaceae |
16 |
291 |
18 |
15 |
910 |
57 |
| TOTAL: | 24 lineages | 255 | 5204 | 20 | 394 | 12451 | 46 |
*Average numbers of RNA sites and regulated genes per genome were calculated for each studied taxonomic group; the average numbers for all lineages are given in the last line.