Skip to main content
. 2013 Sep 2;14:597. doi: 10.1186/1471-2164-14-597

Table 3.

Two-level functional classification of identified RNA motif-regulated genes

Overall functional categories (OFC) Specific functional categories (SFC)
1. Coenzyme metabolism
B12 biosynthesis; Thiamin biosynthesis; Riboflavin biosynthesis; Queuosine biosynthesis; Folate biosynthesis; Molybdenum cofactor biosynthesis
2. Coenzyme uptake
B12 & precursor transporters; Thiamin & precursor transporters; Riboflavin transporters; Queuosine & precursor transporters; Folate transporters
3. Amino acid metabolism
Methionine biosynthesis; Methionine & SAM recycling; Cysteine biosynthesis; Lysine biosynthesis; Glycine metabolism; Serine metabolism; Ornithine degradation; Leucine biosynthesis; Histidine biosynthesis; Threonine biosynthesis; Tryptophan biosynthesis; Amino acid biosynthesis
4. Amino acid uptake
Methionine transporters; Lysine transporters; Glycine transporters; Histidine transporters; Amino acid transporters
5. Secondary metabolism
Aminosugar biosynthesis; Citric acid cycle; Urea and agmatine utilization
6. Metal homeostasis
Cobalt transporters; Molybdenum & tungsten transporters; Magnesium transporters; Potassium transporters
7. Nucleobase metabolism
Purine metabolism; Pyrimidine metabolism
8. Nucleobase uptake
Purine & precursor transporters; Pyrimidine transporters
9. Protein synthesis
Ribosome biogenesis; Amino acyl-tRNA synthetases
10. Miscellaneous Isozymes of B12-dependent enzymes; Multidrug resistance transporter; Polysaccharide degradation; Other or unknown functional roles