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. 2013 Sep 3;13:71. doi: 10.1186/1472-6750-13-71

Table 1.

Screening of extracellular PCX cellulase activity of knockout and original S. cerevisiae BY4741 strains by 4-MUC assay (recombinant/original ratio)

Gene null mutant ORF namea 96-well screening 4-MUC assay Condensed sample 4-MUC assay (o/n OD600)
Protein-trafficking genes:
chc1∆::KanMX
YGL206C
2.5
2.4 (2.8)
clc1∆::KanMX
YGR167W
3.8
2.6 (3.1)
nyv1∆::KanMX
YLR093Cf
1.5
1.7 (5.7)
pep12∆::KanMX
YOR036W
1.9
2.6 (2.9)
vam3∆::KanMX
YOR106W
1.6
NA
vps1∆::KanMX
YKR001C
1.2
NA
vps15∆::KanMX
YBR097W
1.9
1.3 (4.2)
vps21∆::KanMX
YOR089Cf
3.3
6.5 (6.1)
vps33∆::KanMX
YLR396C
1.5
0.9 (5.5)
ypt7∆::KanMX
YML001Wb
1.7
1.0 (5.1)
Glycosylation-related genes:
aga2∆::KanMX
YGL032C
0.9
NA
alg3∆::KanMX
YBL082Cc
0.5
NA
alg5∆::KanMX
YPL227Cc
0.7
NA
alg6∆::KanMX
YOR002Wc
0.8
NA
alg8∆::KanMX
YOR067Cc
1.5
NA
alg9∆::KanMX
YNL219Cc
1.5
NA
alg12∆::KanMX
YNR030Wc
1.7
NA
anp1∆::KanMX
YEL036Cc
1.8
NA
csg2∆::KanMX
YBR036C
1.0
NA
cwh41∆::KanMX
YGL027Cc
0.1
NA
cwh43∆::KanMX
YCR017C
1.3
NA
die2∆::KanMX
YGR227Wc
1.5
NA
gda1∆::KanMX
YEL042W
1.6
NA
gnt1∆::KanMX
YOR320C
1.2
NA
gon7∆::KanMX
YJL184W
0.1
NA
gtb1∆::KanMX
YDR221Wd,e
2.7
0.0 (12.6)
hoc1∆::KanMX
YJR075W
0.9
NA
hor7∆::KanMX
YMR251W-A
1.4
NA
ktr1∆::KanMX
YOR099Wd
0.8
NA
ktr2∆::KanMX
YKR061Wd,f
0.9
NA
ktr3∆::KanMX
YBR205Wd
1.0
NA
ktr4∆::KanMX
YBR199Wd
1.0
NA
ktr5∆::KanMX
YNL029Cc
1.0
NA
ktr6∆::KanMX
YPL053Cd
1.3
NA
ktr7∆::KanMX
YIL085Cd
1.0
NA
mnl1∆::KanMX
YHR204Wd
1.2
NA
mnn2∆::KanMX
YBR015Cc
1.3
0.8 (3.8)
mnn5∆::KanMX
YJL186Wf
1.9
3.0 (5.6)
mnn9∆::KanMX
YPL050Cc,f
2.2
3.8 (5.5)
mnn10∆::KanMX
YDR245W
2.5
6.0 (3.8)
mnn11∆::KanMX
YJL183Wc
2.0
4.5 (3.7)
mns1∆::KanMX
YJR131Wd
0.5
NA
mnt2∆::KanMX
YGL257Cd
1.2
NA
mnt3∆::KanMX
YIL014Wd,e
2.5
1.7 (5.2)
mrl1∆::KanMX
YPR079Wf
1.6
NA
ost3∆::KanMX
YOR085Wc
1.1
NA
ost4∆::KanMX
YDL232Wc,f
1.6
NA
ost5∆::KanMX
YGL226C-Ac
0.9
NA
ost6∆::KanMX
YML019Wc,f
1.8
NA
pmt1∆::KanMX
YDL095Wc
3.1
3.2 (4.7)
pmt2∆::KanMX
YAL023Cc
5.3
1.8 (4.7)
pmt3∆::KanMX
YOR321Wc
1.1
1.0 (4.4)
pmt5∆::KanMX
YDL093Wc
2.1
4.3 (6.3)
pmt6∆::KanMX
YGR199Wc
0.8
NA
ynd1∆::KanMX
YER005Wf
1.1
NA
yur1∆::KanMX
YJL139Cf
2.0
2.8(4.5)
yjr061w∆::KanMX YJR061W 1.0 NA

aYGL038C, YLR240W, YGL095C knockout strains failed to be transformed with PCX.

bEnhancement of Ctcel8A endocellulase activity [52].

Enhancementc and decreased of Cel8Aenz endocellulase activity [48].

eDetectable NpaBGS beta-glucosidase activity as screened by pNPG assay.

fThe null mutant could grow in SC-URA medium with 1% cellobiose when the NpaBGS beta-glucosidase gene is functional inside.

The 4-MUC activity ratio is the average PCX activity of the three highest expressing recombinants (single-gene-KO strain) to the average original PCX activity (BY4741 strain).