Table 2.
Assembly statistics of S. roseosporus, N. crassa, S. parasitica, and P. falciparum
| Species | Assembler | No. of contigs | Total, Mb | Max | Mean | N50 | Time, min | Memory, GB |
| S. roseosporus | JR-Assembler | 1,189* | 7.68* | 40,501 | 6,461* | 11,374* | 99* | 26.1* |
| ABySS | 1,127* | 7.73* | 55,078* | 6,859* | 12,499* | 325 | 67.0 | |
| Velvet | 1,192 | 7.49 | 61,423* | 6,286 | 11,075 | 166 | 59.5 | |
| SOAPdenovo | 2,453 | 7.65 | 24,303 | 3,120 | 4,691 | 19* | 34.1* | |
| N. crassa | JR-Assembler | 12,244* | 38.61 | 58,672* | 3,153* | 6,074 | 76* | 14.9* |
| ABySS | 13,420 | 38.05 | 45,381 | 2,835 | 6,350* | 191 | 31.9 | |
| Velvet | 10,187* | 36.11 | 45,599* | 3,544* | 6,781* | 155 | 30.5 | |
| SOAPdenovo | 16,261 | 40.25* | 31,423 | 2,475 | 5,029 | 30* | 19.7* | |
| Edena | 17,083 | 39.95* | 42,952 | 2,338 | 4,534 | 659 | 20.4 | |
| S. parasitica | JR-Assembler | 40,587* | 46.09* | 119,543* | 1,135* | 1,510* | 172 | 14.1* |
| ABySS | 52,087* | 38.26 | 94,931* | 734 | 740 | 145 | 24.1 | |
| Velvet | 53,736 | 47.38* | 91,073 | 881* | 1,021* | 116* | 22.0 | |
| SOAPdenovo | 66,456 | 45.59 | 30,400 | 686 | 712 | 18* | 32.5 | |
| Edena | 62,357 | 44.13 | 41,473 | 707 | 746 | 610 | 19.5* | |
| P. falciparum | JR-Assembler | 13,352* | 11.02 | 7,939* | 825* | 975* | 133 | 9.0* |
| ABySS | 16,658 | 11.80 | 7,934 | 708 | 826 | 134 | 26.5 | |
| Velvet | 16,423* | 11.91* | 7,940* | 725* | 848* | 60* | 18.2 | |
| SOAPdenovo | 17,424 | 11.93* | 7,939* | 684 | 786 | 7* | 21.5 | |
| Edena | 16,531 | 11.76 | 7,936 | 711 | 831 | 359 | 13.4* |
The assembly metrics here follow those in Table 1.
*
The top two best values of each assembly metrics are marked in bold italic.