Table 2. Sources and haplogroup affiliation of the sheep complete mtDNA sequences.

	ID# a	Original name	Haplogroup	Breed	GenBank
	Outgroup	Ovis ammon			HM236188
Novelmitogenomes	01	CO014	A1	Comisana	KF302440
	02	CO015	A1	Comisana	KF302441
	03	CO020	A1	Comisana	KF302442
	04	CO021	A1	Comisana	KF302443
	05	CO026	A1	Comisana	KF302444
	06	CO017	A1	Comisana	KF302445
	07	MI066	A	Merinizzata Italiana	KF302446
	08	LA021	B	Lacaune	KF302447
	09	GP117	B1	Gentile di Puglia	KF302448
	10	SO006	B1a1a	Sopravissana	KF302449
	11	AP038	B1a1a	Appenninica	KF302450
	12	AP053	B1a1a	Appenninica	KF302451
	13	CO002	B1a2a	Comisana	KF302452
	14	LA068	B1a2a	Lacaune	KF302453
	15	SO012	B1a2a1	Sopravissana	KF302454
	16	GP092	B1a2a1	Gentile di Puglia	KF302455
	17	SO030	B1a2a1a	Sopravissana	KF302456
	18	GP105	B1a2a1a	Gentile di Puglia	KF302457
	19	SO009	B1a2a1a	Sopravissana	KF302458
	20	MI075	B1a2a1a	Merinizzata Italiana	KF302459
	21	LA047	B1a2b	Lacaune	KF302460
	22	CO027	B1a2b	Comisana	KF302461
	23	CO046	B1a2b	Comisana	KF302462
Publishedmitogenomes	HM236174	HM236174	A	Merino	HM236174
	HM236175	HM236175	A	Romney	HM236175
	HM236176	HM236176	B1a	Karakas	HM236176
	HM236177	HM236177	B1a	Karakas	HM236177
	HM236178	HM236178	C	Karakas	HM236178
	HM236179	HM236179	C	Morkaraman	HM236179
	HM236182	HM236182	E	Awassi	HM236182
	HM236183	HM236183	E	Tuj	HM236183
	HM236180	HM236180	D	Morkaraman	HM236180
	HM236181	HM236181	D	Morkaraman	HM236181
	SRS	NC_001941	B1a1	Merinolandschaf	NC_001941

^aLabeled as in Figure 4.