Table 2. Frequency of the ATGAC sequences in extended RPE-4s (eRPE-4s).
Regions | Category of eRPE-4 | Length (bp) | Amount of ATGAC | Frequency (per kb) | |
eRPE-4 | eRPE-4 including RPE-4 | Total | 2,243 | 35 | 15.6 |
RPE-4 | 806 | 27 | 33.5 | ||
Extended | 1,437 | 8 | 5.6 | ||
eRPE-4 including RPE-6 | Total | 1,805 | 35 | 19.4 | |
RPE-6 | 1,235 | 20 | 16.2 | ||
Extended | 570 | 15 | 26.3 | ||
eRPE-4 including RPE-7 | Total | 2,291 | 33 | 14.4 | |
RPE-7 | 878 | 18 | 20.5 | ||
Extended | 1,413 | 15 | 10.6 | ||
eRPE-4 without RPE-4,6,7 | Extended | 3,565 | 17 | 4.8 | |
RPE-1,-2,-3,-5 | 24,452 | 3 | 0.1 | ||
Other regions | 1,248,731 | 2,311 | 1.9 | ||
Whole genome of R. japonica | 1,283,087 | 2,417 | 1.9 |
ND: Not detected.