Table 1.
The primers used for detection of the various genes by PCR, the amplicon size and relevant references.
Gene | Primer | Oligonucleotide pairs (5´→3´) | Amplicon (bp) | Reference |
LT | LTA-1 | GGCGACAGATTATACCGTGC | 696 | Schultsz |
LTA-2 | CCGAATTCTGTTATATATGTC | et al., 1994 | ||
STa | STI-1 | TTAATAGCACCCGGTACAAGCAGG | 147 | Olsvik |
STI-2 | CTTGACTCTTCAAAAGAGAAAATTAC | et al., 1993 | ||
STb | STb-1 | ATCGCATTTCTTCTTGCATC | 172 | Blanco |
STb-2 | GGGCGCCAAAGCATGCTCC | et al., 1997 | ||
VTl | VT1-A | GAAGAGTCCGTGGGATTACG | 130 | Pollard |
VT1-B | AGCGATGCAGCTATTAATAA | et al., 1990 | ||
VT2 | VT2–3 | CCGTCAGGACTGTCTGAAAC | 726 | Woodward |
VT2–5 | GAGTCTGACAGGCAACTGTC | et al., 1992 | ||
pap | pap-1 | GCAACAGCAACGCTGGTTGCATCAT | 336 | Yamamoto |
pap-2 | AGAGAGAGCCACTCTTATACGGACA | et al., 1995 | ||
hly | hly-1 | AACAAGGATAAGCACTGTTCTGGCT | 1177 | Yamamoto |
hly-2 | ACCATATAAGCGGTCATTCCCGTCA | et al. 1995 | ||
iuc | iuc-1 | TACCGGATTGTCATATGCAGACCGT | 602 | Yamamoto |
iuc-2 | AATATCTTCCTCCAGTCCGGAGAAG | et al.,1995 | ||
cnf | cnf1 | AAGATGGAGTTTCCTATGCAGGAG | 498 | Yamamoto |
cnf2 | CATTCAGAGTCCTGCCCTCATTATT | et al.,1995 | ||
sfa | sfa-1 | CTCCGGAGAACTGGGTGCATCTTAC | 410 | Yamamoto |
sfa-2 | CGGAGGAGTAATTACAAACCTGGCA | et al. 1995 | ||
afa | afa-1 | GCTGGGCAGCAAACTGATAACCTC | 750 | Yamamoto |
afa-2 | CATCAAGCTGTTTGTTCGTCCGCCG | et al.1995 |