Table 1.
CUX1 binding sites on the ENCODE array
# of binding sites |
513 |
Average site width (bp) |
503 |
Sites tested in qPCR |
25 |
Validation rate |
92% |
Validation rate (with consensus) |
100% |
Validation rate (no consensus) | 90% |
Number and average width of CUX1 binding sites identified on the NimbleGen HG17 ENCODE array using chromatin purified from Hs578t cells. Also shown are the number and percentage of binding sites that were validated in an independent ChIP experiment. The validation rate is also shown independently for sites that contained the ATCRAT consensus sequence as well as for sites that did not.