Table 1. Summary of yellow horn 454 sequencing and assembly.
Items | Raw reads | Trimmed Reads | Isotigs | Singlets | Unigenes |
Total number | 1,221,677 | 1,147,624 | 32,165 | 42,787 | 51,867 |
Total bases (bp) | 599,995,187 | 530,556,412 | 28,133,950 | 17,190,382 | 36,093,173 |
Average length (bp) | 491.1 | 462.3 | 874.7 | 401.8 | 695.9 |
N50 (bp) | – | – | 1,116 | 549 | 928 |
Median (bp) | 537 | 511 | 732 | 484 | 570 |
Range of length (bp) | 23–1,478 | 45–965 | 45–10,088 | 45–823 | 45–10,088 |
GC content (%) | 43.70% | 43.64% | 41.40% | 42.70% | 41.37% |