Table 2.
The number of putative INDELs detected in silico in this study
| Oryza species* | Genome type | No. INDELs candidate sites in this study | No. BESs used in this study |
|---|---|---|---|
| rufipogon | AA | 439 | 70,982 |
| nivara | AA | 462 | 106,124 |
| glaberrima | AA | 556 | 66,821 |
| punctata | BB | 1,270 | 68,384 |
| minuta | BBCC | 1,911 | 169,460 |
| officinalis | CC | 1,504 | 101,091 |
| alta | CCDD | 1,370 | 128,732 |
| australiensis | EE | 705 | 135,769 |
| brachyantha | FF | 550 | 67,364 |
| granulata | GG | 538 | 138,171 |
| ridleyi | HHJJ | 831 | 204,729 |
| coarctata | HHKK | 1,971 | 195,285 |
|
| |||
| 12,107 | 1,452,912 | ||
*
The taxonomy is in accordance with Ammiraju et al. (2006)