Table 3.

The 22 INDEL markers developed to discriminate wild Oryza species in this study

Marker ID*	Primer sequences		INDEL size (bp)	BES ID
	Forward	Reverse
Ch01-301W	TTTGTTCATCTGCATCAACTCA	TGATCATACGATGGAAAGGTAGA	56	OR_ABa0229J12.r
Ch02-269W	TTCGGTAAAGAACCTCTTGAGTG	GATTCTAGTGCCATTTCGCC	135	OP__Ba0011A10.r
Ch02-308W	CCTTAAGAAATTGTTAGTTCAGGCA	CTTCTTCTTGCTAGCAGTTGTCT	64	OP__Ba0008P06.f
Ch02-342W	TGGCAGACCATCTGAGAGAG	CCAGAAATCAGCAATCTGCAA	196	OB__Ba0075C24.f
Ch02-343W	TTCTCCACCCTCGTCTTCTC	TTGCTCTCCAGCTTCTCCTC	245	OB__Ba0060I13.r
Ch03-128W	TGATTCCTTGGTAGTCTTCCC	TGCTCACCATAGACTCTTCCA	76	OR_ABa0265L24.r
Ch03-173W	AGGCAAAGTTCAGAATGCAA	AGCGGCAATAGCCATCTAAG	217	OG_ABa0011K22.r
Ch03-363W	TTTCCGTCAGATTGCACATT	TGATTTACCACCAAACAGTAAGTCA	98	OB__Ba0073N03.f
Ch04-276G	GGTACCTCCAGGAATCCCAT	CCAATGTGCATGGCATTTAG	229	OG_ABa0018K10.r
Ch04-312W	TTCTTTGTCGTGATCGCAAG	TTTCATTCAACGTGGTGGTT	218	OR_ABa0207K04.f
Ch05-067W	CCCATTCCCTATACCTGTGTAAA	AGAATCACAGAGGATCCGAA	60	OR_ABa0151A19.r
Ch05-070W	GGAAGAAAGCAAGGATGCAA	TCTGCTGTCATATGCTTGGG	108	OA_BBa0041D18.f
Ch05-109G	TGATGATGAAATACCTTGCCC	TGTATGGCTGCATTTGCACT	276	OG_ABa0128B15.f
Ch05-202W	TCTTCAAGAAACCAGAAGATCTGA	TGGATGTGCTTCTGACGCTA	83	OG_ABa0074B07.r
Ch05-277W	CCAGAACCGTTGTTCCTGTT	GGATGTTGAGAAGGGTGGAA	64	OR_ABa0019H23.r
Ch06-269W	CCAATGAAATGCAGTCGAGA	GGACACATTCAACCCTCACA	79	OC__Ba0241E15.f
Ch06-300W	CACAGACAGTGTCCAGAGTTCAG	GCCTTGAAAGTTGAAACCCA	180	OG_ABa0049K22.f
Ch06-306W	GAGCCCTCGGTTAGATGTGA	CGTGCCGTATATGTCCTGAA	61	OM__Ba0207M10.f
Ch07-233W	TCACCAAGCCAATTCTTCTTC	CCTCCTAAACCAGACTGCACA	100	OR_ABa0269N20.f
Ch08-006W	TTGCATTGAATCAGTAGGTCAA	AGGACCTTGATTTGCCATGT	138	OB__Ba0054E21.f
Ch09-037G	CCGGAGTCCTATCCACAGGT	TTGGGCATCACCTGATAAGA	202	OG_ABa0001G03.f
Ch10-044G	CTTGTTTCCAGCAAGGTTGG	TACCAGGTTTGCTGCATGTT	432	OG_ABa0068J15.r

^*The suffixes W and G indicate that the markers are multi- and single (granulata)-INDELs, respectively.