Table 2. Nucleotide differences for mitochondrial markers CO1 and ATP6.
mtDNA
|
CO1
|
ATP6
|
mtDNA combined | ||||||
---|---|---|---|---|---|---|---|---|---|
CO1 (n=126) | ATP6 (n=54) | 11 | 22 | 133 | 463 | 576 | 725 | 785 | CO1+ATP6 (n=54) |
C1 | A1 | A | T | A | T | T | T | T | C1A1 (n=18) |
C1 | A2 | . | . | . | . | C | . | C | C1A2 (n=1) |
C2 | A1 | . | . | . | C | . | . | . | C2A1 (n=5) |
C3 | A1 | . | A | . | C | . | . | . | C3A1 (n=1) |
C4 | A3 | . | . | G | C | C | C | . | C4A3 (n=1) |
C5 | A1 | . | A | G | C | . | . | . | C5A1 (n=3) |
C5 | A2 | . | A | G | C | C | . | C | C5A2 (n=19) |
C6 | A2 | G | A | G | C | C | . | C | C6A2 (n=6) |
Nucleotide differences in mitochondrial markers Cytochrome Oxidase I (CO1) and adenosine triphosphate synthase subunit 6 (ATP6). Six haplotypes (C1-C6) are found for the CO1 fragment (basepairs 1-544; n=126) with a total of four variable sites. Three haplotypes (A1-A3) are found for the ATP6 fragment (basepairs 545-989; n=54) with a total of three variable sites. Eight different haplotypes are found when the CO1 and ATP6 markers combined (e.g. C1A1, basepairs 1-989; n=54).