. Author manuscript; available in PMC: 2013 Sep 13.

Published in final edited form as: J Comput Biol. 2007 Oct;14(8):1025–1043. doi: 10.1089/cmb.2007.0071

Table 2. Time for HMMatch Training.

Peptide	Time (sec)	Iterations	States	Spectra
DFLAGGVAAAISK	6	2	81	36
DFLAGGIAAAISK	5	2	81	33
DLATVYVDVLK	4	2	69	36
AVMDDFAAFVEK	16	2	75	110
LNDLEDALQQAK	3	2	75	28
*AVMDDFAAFVEK**	8	2	75	56
SHCIAEVENDEMPADLPSLAADFVESK	16	2	120	27
*SHCIAEVENDEMPADLPSLAADFVESK**	44	2	141	40