. Author manuscript; available in PMC: 2013 Sep 13.

Published in final edited form as: J Comput Biol. 2007 Oct;14(8):1025–1043. doi: 10.1089/cmb.2007.0071

Table 3. Time to Compute HMMatch Scores.

Peptide	Time (sec)	Spectra	Spectra/s
DFLAGGVAAAISK	586	23,526	36.47
DFLAGGIAAAISK	143	6001	41.11
DLATVYVDVLK	90	5683	62.46
AVMDDFAAFVEK	137	6903	48.96
LNDLEDALQQAK	175	8602	48.87
*AVMDDFAAFVEK**	172	8582	48.49
SHCIAEVENDEMPADLPSLAADFVESK	629	7879	13.33
*SHCIAEVENDEMPADLPSLAADFVESK**	919	7599	8.45