Table 1. Differentially expressed genes related to carbohydrate metabolism and cell wall biogenesis in the stems and roots of Valencia sweet orange (Citrus sinensis) caused by Ca. L. asiaticus infection.
| Accession No. | Gene description | Log2 fold change | |
| Stem | Root | ||
| Starch synthesis | |||
| DN622894 | ADP-glucose pyrophosphorylase large subunit 3 (APL3) | 1.96 | |
| CB292132 | Granule-bound starch synthase (GBSS) | 1.82 | |
| Starch and sucrose degradation | |||
| CX046632 | Exocellular acid invertase 1 (Exinv1) | 2.43 | |
| CD575166 | Neutral invertase | −1.00 | |
| DN958063 | Alpha-amylase (AMY1) | 2.45 | |
| CF836730 | Beta-amylase (BMY1/BMY7) | −1.17 | |
| Minor carbohydrate metabolism | |||
| CN184547 | putative Myo-inisitol oxygenase | 1.91 | |
| CX046914 | Raffinose synthase family protein (din10) | 1.51 | |
| CX306291 | Stachyose synthase | −1.11 | |
| CD575394 | Trehalose-6-phosphate phosphatase (TPPA) | −1.31 | |
| CX636014 | Trehalose-6-phosphate phosphatase, putative | −1.64 | |
| CX309237 | Trehalose-6-phosphate synthase 2 (TPS2) | −1.21 | |
| CF831824 | Trehalose-6-phosphate synthase 8 (TPS8) | −1.63 | |
| CX306907 | Trehalose-6-phosphate synthase 10 (TPS10) | −1.83 | |
| Cell wall precursors | |||
| CK939533 | UDP-glucose 4-epimerase | −1.37 | |
| Cell wall proteins | |||
| CX638719 | Extensin | −1.41 | |
| CX076453 | Extensin-like protein | 1.22 | |
| CF417841 | Proline-rich protein (PRP4) | 1.09 | |
| CK938120 | Glycine-rich RNA-binding protein | 1.23 | |
| Cellulose synthesis | |||
| CF835773 | Cellulose synthase-like C7 (CSLC7) | −1.90 | |
| CV705580 | Cellulose synthase catalytic subunit-like protein | −1.72 | |
| DN618266 | Cellulose synthase-like protein D4 (CSLD4) | −1.44 | |
| CX045083 | Cellulose synthase isolog | 1.25 | |
| Cell wall modification | |||
| DN618428 | BURP domain containing protein | 2.01 | |
| CX665316 | Polygalacturonase-like protein | 1.10 | |
| CF835126 | Expansin-related protein 1 (EXP1) | 2.03 | |
| CK939135 | Syringolide-induced protein 19-1-5 | −2.67 | |
| CX296097 | putative Xyloglucan endotransglycosylase (XET) | −2.80 | |
| CV716643 | Xyloglucan endotransglycosylase 1 (XET) | −2.53 | |
Accession No. is a unique identifier of EST sequences from several citrus species and hybrids linked to the NCBI. LFC is the ratio of the expression level in the infected samples compared to the healthy trees. The ratio is the mean of 3 replicates. The annotation is according to the latest available BLASTx search at non-redundant protein database at the NCBI. Metabolic pathway grouping is based on the gene ontology in the MapMan program (Thimm et al., 2004).