Table 4. Differentially expressed genes related to transcriptional factors in the stems and roots of Valencia sweet orange (Citrus sinensis) caused by Ca. L. asiaticus infection.
| Accession No. | Gene description | Log2 fold change | |||||
| Stem | Root | ||||||
| AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family | |||||||
| CF836437 | putative AP2 domain transcription factor | 1.27 | |||||
| CN185220 | Transcription factor TINY, putative | −2.56 | |||||
| CF831712 | AP2 domain transcription factor-like protein | −1.80 | |||||
| CK939963 | CaCBF1B | −2.12 | |||||
| ARF, Auxin Response Factor family | |||||||
| CX294853 | Auxin response factor 10 | −1.17 | |||||
| Arabidopsis response regulator (ARR) | |||||||
| BQ623949 | Response regulator1 (ARR1) | 1.19 | |||||
| AS2, Lateral Organ Boundaries Gene Family | |||||||
| CF834266 | LOB domain protein 38 | −1.59 | |||||
| Aux/IAA family | |||||||
| CD574798 | AUX/IAA protein | −2.21 | |||||
| DR404247 | AUX IAA protein | −1.18 | |||||
| CV704184 | AUX IAA protein | −1.07 | |||||
| CV708756 | Auxin-regulated protein | −1.46 | |||||
| bHLH, Basic Helix-Loop-Helix family | |||||||
| CX045057 | Basic helix-loop-helix (bHLH) family protein | 2.63 | |||||
| CK932760 | bHLH transcription factor, putative | −1.04 | |||||
| CX676159 | Helix-loop-helix DNA-binding protein-like | −1.60 | |||||
| CF506528 | putative bHLH transcription factor | −1.60 | |||||
| CX671833 | putative Transcription factor RAU1 | 1.39 | |||||
| CX044856 | unknown protein | −1.11 | |||||
| bZIP transcription factor family | |||||||
| CF507428 | bZIP transcription factor | −3.04 | |||||
| C2C2(Zn) CO-like, Constans-like zinc finger family | |||||||
| CX048448 | Zinc finger (B-box type) family protein | −1.62 | |||||
| C2C2(Zn) DOF zinc finger family | |||||||
| DN798578 | unknown protein | 1.49 | |||||
| CX640084 | unknown protein | 1.10 | |||||
| C2C2(Zn) GATA transcription factor family | |||||||
| CX049639 | putative protein | −1.08 | |||||
| Zinc finger family | |||||||
| DN622949 | Zinc finger protein, ZPT2-12 | −1.46 | |||||
| DN797852 | Zinc finger protein, ZPT2-12 | −1.52 | |||||
| CK939958 | Zinc finger (CCCH-type) family protein | −1.56 | |||||
| GRAS transcription factor family | |||||||
| CN186577 | Scarecrow gene regulator | −1.62 | |||||
| CB291917 | Scarecrow transcription factor family protein | −1.25 | |||||
| CX670106 | Scarecrow-like transcription factor 14 (SCL14) | −1.14 | |||||
| CV710984 | AP2 SCARECROW-like protein | 1.01 | |||||
| HB, Homeobox transcription factor family | |||||||
| DN798602 | Homeobox leucine zipper protein | −1.42 | 1.21 | ||||
| CV704865 | Homeobox 2 protein | 1.06 | |||||
| MYB domain transcription factor family | |||||||
| CX307046 | MYB-like DNA-binding domain protein | 1.68 | |||||
| CK936024 | MYB family transcription factor (MYB68) | 1.30 | |||||
| CF834992 | MYB-related transcription factor | −1.42 | 1.20 | ||||
| CF506570 | Tuber-specific and sucrose-responsive element binding factor | −2.69 | |||||
| WRKY domain transcription factor family | |||||||
| CK939682 | putative WRKY transcription factor 30 (WRKY30) | −1.91 | |||||
| AJ489051 | putative WRKY4 transcription factor | 3.16 | |||||
| CX050828 | putative WRKY-type DNA binding protein 23 (WRKY23) | 1.51 | |||||
| CX643787 | WRKY transcription factor | 1.32 | |||||
Accession No. is a unique identifier of EST sequences from several citrus species and hybrids linked to the NCBI. LFC is the ratio of the expression level in the infected samples compared to the healthy trees. The ratio is the mean of 3 replicates. The annotation is according to the latest available BLASTx search at non-redundant protein database at the NCBI. Metabolic pathway grouping is based on the gene ontology in the MapMan program (Thimm et al., 2004).