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. 2009 Aug;38(3):386–401. doi: 10.1152/physiolgenomics.00083.2009

Table 4.

Enriched GO categories for K-means clusters

Cluster 1
    Voltage-gated sodium channel activity
    Alcohol dehydrogenase activity
    Oxidoreductase activity\acting on the aldehyde or oxo group of donors
    Aminomethyltransferase activity
    Carboxylic acid metabolism
    Steroid biosynthesis
    Cell cycle arrest
    Negative regulation of caspase activity
    Estrogen metabolism
    Glucuronosyltransferase activity
    Xenobiotic metabolism
    Neurotransmitter uptake
    Serine-type endopeptidase inhibitor activity
Cluster 2
    Establishment of chromosome localization
    G2 phase of the mitotic cell cycle
    Mitosis
    Spindle organization and biogenesis
    Nucleosome assembly
    Phosphoinositide-mediated signaling
    Fatty acid β-oxidation
    Microspike biogenesis
    Pyrimidine deoxyribonucleotide biosynthesis
    Racemase and epimerase activity
    Response to DNA damage stimulus
    Ribose phosphate diphosphokinase activity
Cluster 3
    1-Phosphatidylinositol-4-phosphate 5-kinase activity
    Chemokine activity
    Chemotaxis
    Cyclin-dependent protein kinase inhibitor activity
    Endosome organization and biosynthesis
    NAD+ ADP-ribosyltransferase activity
    Negative regulation of transcription, DNA dependent
    Regulation of transcription from RNA polymerase II promoter
    Transcriptional repressor acitivity
    Response to unfolded protein
    Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity
    Transition metal ion binding
    Ubiquitin cycle
    Ubiquitin-dependent protein catabolism
    Ubiquitin-protein ligase activity
Cluster 4
    Cell adhesion
Cluster 5
    Transition metal ion binding
Cluster 6
    cAMP-dependent protein kinase regulator activity
    Detection of stimulus during sensory perception
    Histamine receptor activity
    Regulation of neurotransmitter levels
    Synaptic transmission\cholinergic
Cluster 7
    Apical junction assembly
    Cytoskeletal protein binding
    Myofibril assembly
    Establishment and/or maintenance of chromatin architecture
    Regulation of cell growth
    Positive regulation of cell proliferation
    S100β binding
    Glycerol kinase activity
    Glycerol-3-phosphate metabolism
    GTPase activator activity
    Regulation of GTPase activity
    IκB kinase/NF-κB cascade
    PKC inhibitor activity
    Pyridine nucleotide biosynthesis
Cluster 8
    Bile acid catabolism
    Glutathione transferase activity
    Hemoglobin binding
    Lipid transporter activity
    Lipoprotein metabolism
    Polysaccharide biosynthesis
    Blood pressure regulation
    Wound healing
Cluster 9
    Collagen catabolism
    Peptidoglycan metabolism
    IGF binding
    Regulation of cell growth
    MAPK phosphatase activity
    Myeloid cell differentiation
    Protein dimerization activity
    Protein folding
    Response to unfolded protein
Cluster 10
    Nucleosome assembly
    Serine family amino acid metabolism
Cluster 11
    Activation of MAPKKK activity
    Alkanesulfonate biosynthesis
    Cysteine metabolism
    Negative regulation of apoptosis
    Cell cycle arrest
    Regulation of cyclin-dependent protein kinase acitivity
    Cell fate determination
    Notch binding
    Cell motility
    Growth factor activity
    Chemokine activity
    Inorganic anion exchanger activity
    LDL receptor activity
    Phosphofructokinase activity
    Protein dimerization activity
    Protein kinase inhibitor activity
Cluster 12
    Cell migration
    Immune response
    Transmembrane receptor acitivity
    Potassium ion binding
    Voltage-gated potassium channel activity