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. 2013 Sep 16;8(9):e73478. doi: 10.1371/journal.pone.0073478

Figure 9. Comparison of the pharmacophore model with docking experiment.

Figure 9

Panel A. First ranked docking poses superimposed with the pharmacophore (Hypothesis 1, AAAR). Panel B. The first ranked docking pose is shown in the active site of RNase H and important residues are highlighted, including magnesium ions (green sphere) and water (cyan sphere).