Table A4.
Primer hits for cd3af/R3cd and nirs1F/nirs6R with 0 and 2 mismatches to the nirS reference dataset.
| 0 Mismatches | 2 Mismatches | |||||||
|---|---|---|---|---|---|---|---|---|
| cd3af | R3cd | nirs1F | nirS6R | cd3af | R3cd | nirs1F | nirs6R | |
| ALPHA-PROTEOBACTERIA | ||||||||
| Dinoroseobacter shibae | x | x | x | x | x | |||
| Magnetospirillum gryphiswaldense | x | x | x | x | x | |||
| Magnetospirillum magneticum | x | x | x | x | x | x | ||
| Paracoccus denitrificans | x | x | x | x | x | x | x | x |
| Paracoccus pantotrophus | x | x | x | x | x | x | x | x |
| Polymorphum gilvum | x | x | x | x | x | x | x | |
| Rhodobacter sp. | x | x | x | x | x | x | ||
| Roseobacter denitrificans | x | x | x | x | x | |||
| Roseobacter litoralis | x | x | x | x | x | |||
| Ruegeria pomeroyi | x | x | x | x | x | |||
| Stappia aggregate | x | x | x | x | x | x | x | |
| BETA-PROTEOBACTERIA | ||||||||
| Achromobacter sp. | x | x | x | x | x | x | ||
| Acidovorax delafieldii | x | x | x | |||||
| Acidovorax ebreus | x | x | x | x | ||||
| Acidovorax sp. | x | x | x | x | ||||
| Alicycliphilus denitrificans | x | x | x | x | x | x | ||
| Anaerolinea thermophile | x | x | ||||||
| Azoarcus sp. | x | x | x | x | x | x | x | |
| Bordetella petrii | x | x | x | x | x | |||
| Brachymonas denitrificans | x | x | x | x | ||||
| Burkholderia cepacia | x | x | x | x | x | x | x | x |
| Candidatus accumulibacter | x | x | x | x | x | |||
| Comamonas denitrificans | x | x | ||||||
| Cupriavidus metallidurans | x | x | x | |||||
| Cupriavidus necator | x | x | x | x | x | x | x | |
| Cupriavidus taiwanensis | x | x | x | x | x | |||
| Dechloromonas aromatica | x | x | x | x | x | x | x | |
| Dechlorosoma suillum | x | x | x | x | x | x | ||
| Leptothrix cholodnii | x | x | x | x | ||||
| Pseudogulbenkiania ferrooxidans | x | x | x | x | x | |||
| Pseudogulbenkiania sp. | x | x | x | x | ||||
| Ralstonia eutropha | x | x | x | x | x | x | x | |
| Rubrivivax benzoatilyticus | x | x | x | x | x | |||
| Rubrivivax gelatinosus | x | x | x | x | x | |||
| Sideroxydans lithotrophicus | x | x | x | x | ||||
| Thauera sp. | x | x | x | x | x | x | x | |
| Thiobacillus denitrificans | x | x | x | x | x | x | x | x |
| GAMMA PROTEOBACTERIA | ||||||||
| Beggiatoa sp. | ||||||||
| gamma proteobacterium | x | x | x | x | ||||
| Hahella chejuensis | x | x | x | x | ||||
| Kangiella koreensis | x | |||||||
| Marinobacter aquaeolei | x | x | x | x | ||||
| Marinobacter hydrocarbonoclasticus | x | x | x | x | x | |||
| Pseudomonas aeruginosa | x | x | x | x | x | x | x | x |
| Pseudomonas brassicacearum | x | x | x | x | ||||
| Pseudomonas chloritidismutans | x | x | x | x | x | x | ||
| Pseudomonas fluorescens | x | x | x | x | x | x | ||
| Pseudomonas sp. | x | x | x | x | x | x | x | x |
| Pseudomonas stutzeri | x | x | x | x | x | x | x | x |
| nitratiruptor sp. | ||||||||
| OTHER | ||||||||
| Aromatoleum aromaticum | x | x | x | x | x | |||
| Roseiflexus castenholzii | x | x | x | |||||
| Oceanithermus profundus | x | x | ||||||
| Thermus scotoductus | x | |||||||
| Thermus thermophilus | x | x | ||||||
| Candidatus kuenenia | ||||||||
| Persephonella marina | ||||||||
| Sulfurihydrogenibium sp. | ||||||||
| Hydrogenivirga sp. | x | |||||||
| Hydrogenobacter thermophilus | x | |||||||
| Hydrogenobaculum sp. | ||||||||
| Rhodothermus marinus | x | x | ||||||
| Candidatus methylomirabilis | x | x | x | |||||
| uncultured bacterium | x | x | x | x | ||||
| uncultured chloroflexi | x | |||||||