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. 2013 Sep 17;8(9):e75742. doi: 10.1371/journal.pone.0075742

Table 2. Origin of DNA used as specificity panel, positive and negative samples.

Species Biovar/biotype Origin pla qPCR conventional pla/caf1 PCR
Y. pestis Pestoides G8786 Georgia + +
Y. pestis Antiqua 1.ANT Margaret + +
Y. pestis Antiqua 1.ANT CEB87-021 (343) + +
Y. pestis Antiqua 1.ANT NCTC_570 Bombay267 + +
Y. pestis Antiqua 1.ANT NCTC_10029 13925/58 + +
Y. pestis Antiqua 2.ANT Kuma + +
Y. pestis Antiqua 2.ANT Yokohama + +
Y. pestis Antiqua Kenya 129 + +
Y. pestis Medievalis KIM + +
Y. pestis Medievalis Pestis Kurdistan Rodent 24 + +
Y. pestis Medievalis Pestis Kurdistan Rodent 28 + +
Y. pestis Orientalis EV76, vaccine strain + +
Y. pestis Orientalis NCTC_2028 + +
Y. pestis Orientalis NCTC_8775 139L + +
Y. pestis Orientalis CEB02-417, Vietnam + +
Y. pestis Orientalis Java10 + +
Y. pestis Orientalis K120-43 87/30 + +
Y. pestis Orientalis CEB02-107 (6/69) + +
Y. pestis Orientalis Bara Banki 3 + +
Y. pestis Orientalis CEB02-455 + +
Y. pestis Orientalis M23 + +
Y. pestis Orientalis TS + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M401 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M402 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M403 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M404 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M406 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M407 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M408 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M409 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M410 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M411 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M412 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M413 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M414 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M415 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M418 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M421 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M422 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M423 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M424 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M425 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M426 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M427 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M429 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M431 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M432 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M433 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M435 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M437 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M438 + +
Y. pestis Orientalis Confirmed clinical sample, Madagascar, M439 + +
Acinetobacter baumanii DSM 7324 - -
Bacillus anthracis Vollum - -
Bacillus cereus ATCC 10987 - -
Bacillus globigii DSM 7264 - -
Bacillus thuringensis DSM 2046 - -
Brucella melitensis ATCC 23456 - -
Burkholderia cepacia NCTC 10744 - -
Burkholderia mallei ATCC_23344 - -
Burkholderia pseudomallei ATCC_23343 - -
Burkholderia thailandesis DSM 13276 - -
Campylobacter jejuni ATCC 29482 - -
Candida albicans ATCC 36232 - -
Chlamydophila pneumoniae ATCC 53592 - -
Citrobacter freundii DSM 30039 - -
Clostridium perfringens ATCC 12915 - -
Clostridium sporogenes DSM 795 - -
Coxiella burnetii Nine Mile - -
Eikenella corrodens DSM 8340 - -
Enterobacter aerogenes DSM 30053 - -
Enterococcus faecalis DSM 2570 - -
Escherichia coli ATCC 11303 - -
Francisella tularensis ssp. holarctica Isolate from patient - -
Haemophilus influenzae ATCC 10211 - -
Klebsiella pneumoniae ATCC 13883 - -
Legionella pneumophila NCTC 10332 - -
Listeria monocytogenes DSM 12464 - -
Moraxella catarrhalis DSM 9143 - -
Mycobacterium tuberculosis Isolate from patient - -
Neisseria meningitidis Isolate from patient - -
Propionibacterium acnes DSM 1897 - -
Proteus mirabilis DSM 788 - -
Pseudomonas aeruginosa ATCC10145 - -
Salmonella typhi Isolate from patient - -
Serratia marcescens DSM 1636 - -
Shigella dysenteriae Isolate from patient - -
Staphylococcus aureus toxin B positive DSM 19041 - -
Staphylococcus epidermidis DSM 1798 - -
Stenotrophomonas maltophilia ATCC 5131 - -
Streptococcus pneumoniae DSM 20566 - -
Streptococcus pyogenes DSM 20565 - -
Vibrio cholerae ATCC 15748 - -
Y. pseudotuberculosis Y003 - -
Y. pseudotuberculosis Y004 - -
Y. pseudotuberculosis Y005 - -
Y. pseudotuberculosis Y076 - -
Y. pseudotuberculosis Y077 - -
Y. pseudotuberculosis Y078 - -
Y. pseudotuberculosis Y080 - -
Y. pseudotuberculosis Y130 - -
Y. pseudotuberculosis Y225 - -
Y. pseudotuberculosis Y227 - -
Y. pseudotuberculosis Y239 - -
Y. pseudotuberculosis Y241 - -
Y. pseudotuberculosis Y248 - -
Y. pseudotuberculosis Y252 - -
Y. pseudotuberculosis Y259 - -
Y. pseudotuberculosis Y260 - -
Y. pseudotuberculosis Y250 - -
Y. pseudotuberculosis Y428 - -
Y. pseudotuberculosis Y711 - -
Y. pseudotuberculosis Y716 - -
Y. pseudotuberculosis Y718 - -
Y. pseudotuberculosis Y719 - -
Y. pseudotuberculosis Y724 - -
Y. pseudotuberculosis Y728 - -
Y. pseudotuberculosis Y731 - -
Y. pseudotuberculosis Y732 - -
Y. pseudotuberculosis Y734 - -
Y. pseudotuberculosis Y735 - -
Y. pseudotuberculosis Y781 - -