Table 5.

Error frequency by type and sequence context

Amplicon	Type				Context
	Insertion (%)	Deletion (%)	Mismatch (%)	Overall (%)	Non-homopolymeric mismatch (%)	Homopolymeric mismatch (%)
Run3 gag3	0.2861	0.1535	0.0121	0.4517	0.0097	0.02
Run3 pol1	0.3496	0.0678	0.0114	0.4288	0.0115	0.011
Run3 env3	0.261	0.04	0.0125	0.3135	0.0138	0.0039
Run3 env5	0.3254	0.19	0.014	0.5294	0.0134	0.0171
Run 4 gag3	0.2134	0.082	0.0141	0.3095	0.0151	0.011
Run4 pol1	0.1729	0.1042	0.0127	0.2898	0.0135	0.0097
Average	0.2681	0.1063	0.0128	0.3871	0.0128	0.0121