Table 6. Observed and expected heterozygosity at mini and microsatellite loci of Plasmodium vivax on the Indian subcontinent.
Locus | Observed (He) | Calculated by TPM (Heq) | ||||
N | K | He | Heq | SD | DH/sd | |
PvCDPK | 95 | 22 | 0.916 | 0.932 | 0.013 | −1.254 |
MiniSat 1 | 95 | 18 | 0.826 | 0.911 | 0.017 | −4.994 |
MiniSat 2 | 92 | 11 | 0.842 | 0.84 | 0.038 | 0.074 |
MiniSat 5 | 93 | 16 | 0.912 | 0.898 | 0.023 | 0.616 |
MiniSat 6 | 95 | 16 | 0.888 | 0.897 | 0.021 | −0.426 |
MiniSat 8 | 55 | 7 | 0.698 | 0.757 | 0.067 | −0.876 |
MiniSat 11 | 94 | 18 | 0.924 | 0.91 | 0.02 | 0.7 |
MiniSat 13 | 91 | 14 | 0.887 | 0.88 | 0.025 | 0.279 |
MiniSat 14 | 96 | 14 | 0.873 | 0.878 | 0.027 | −0.161 |
MiniSat 16 | 95 | 11 | 0.815 | 0.838 | 0.038 | −0.582 |
MS_38 | 36 | 6 | 0.656 | 0.735 | 0.073 | −1.088 |
MS_40 | 40 | 7 | 0.786 | 0.772 | 0.062 | 0.223 |
MS_50 | 39 | 9 | 0.779 | 0.833 | 0.041 | −1.327 |
MS_21 | 39 | 8 | 0.734 | 0.808 | 0.050 | −1.497 |
MS_73 | 40 | 7 | 0.836 | 0.772 | 0.060 | 1.061 |
MS_92 | 37 | 11 | 0.862 | 0.876 | 0.031 | −0.472 |
MS_128 | 38 | 13 | 0.905 | 0.900 | 0.035 | 0.150 |
Gomez_1 | 40 | 8 | 0.760 | 0.808 | 0.052 | −0.922 |
N: number of samples, K: number of alleles observed, He: observed gene diversity and Heq: expected gene diversity equilibrium. Boldface values indicate heterozygosity deficiency.