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. Author manuscript; available in PMC: 2014 Aug 26.
Published in final edited form as: J Chem Inf Model. 2013 Jul 17;53(8):1915–1922. doi: 10.1021/ci400216q

Table 1.

List of approaches used in this study to rank CSAR ligands (see the text for more details).

Type Name ID Description
Ligand-based
(2D)
QSAR_no_AD 1 Consensus QSAR model averaging
RF/SiRMS and SVM/Dragon predictions
without applicability domain filtering
QSAR_AD 2 Consensus QSAR model with
applicability domain filtering
Structure-
based (3D)
MEDUSA 3 Molecular docking
Consensus
2D/3D
QSAR_no_AD +
MEDUSA
4 Consensus between models 1 and 3
QSAR_AD +
MEDUSA
5 Consensus between models 2 and 3