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. 2013 Sep 23;4:282. doi: 10.3389/fmicb.2013.00282

Table 2.

Screening substrates.

Function Enzyme Substrate Substrate concentration Detection (nm) Assay type
Cellulose degradation Cellulase AZCL-HE-Cellulose 0.1% (w/v) 590 Liquid
Cellobiohydrolase 4-MUB-β-D-Cellobiose 1 mM 365/450 Liquid
β-Glucosidase PNP-β-D-Glucoside 1 mM 410 Liquid
Hemicellulose degradation Xylanase AZCL-Xylan 0.1% (w/v) 590 Liquid
β-Xylosidase 4-MUB-β-D-Xyloside 365/450 Liquid
Starch degradation α-Amylase Starch Azure 0.5% (w/v) 590 Liquid
α-Glucosidase 4-MUB-α-D-Glucoside 1 mM 365/450 Liquid
Chitin degradation Chitinase Chitin azure 0.1% (w/v) 590 Liquid
N-AcetyL-β-D-glucosaminidase 4-MUB-β-N-acetylglucosamine 1 mM 365/450 Liquid
Lignin degradation Polyphenol oxidase L-dihydroxyphenylalanine 5 mM 480 Liquid
Laccase Syringaldazine 40 μM 530 Liquid
PO4 mineralization Phosphatase 5-Bromo-4-chloro-3-indolyl phosphate 0.1 mM Visual Solid
Protein turnover Protease Skim milk 2% Visual Solid

In order to allow simultaneous detection of multiple activities, azurin cross-linked (AZCL), p-nitrophenyl (PNP) and 4-methylumbelliferyl (MUB) labeled carbohydrates were pooled on the same assay plate per polymer type, e.g., AZCL Xylan and -MUB- β-D-Xyloside were pooled for screening for activities involved in hemicellulose degradation.