Table 4.
IGKC1 and IGKC2 regions on rabbit chromosome 2 (NC_013670.1)
| Position on Chr 2 | O | Cys 80 | Gaps >200 bp in assembly | |
|---|---|---|---|---|
| 3’ enhancer | 98933297-98934433 | + | NA | |
| IGKC1 | 98926095-98926409 | + | NA | |
| IGKJ5 | 98923099-98923136 | + | NA | |
| IGKJ4 | 98922804-98922839 | + | NA | |
| IGKJ3 | 98922514-98922550 | + | NA | |
| IGKJ2 | 98922229-98922267 | + | NA | |
| IGKJ1 | 98921851-98921886 | + | NA | |
| aIGKC1+IGKJ 1-5 | 98921714-98926540 | + | NA | |
| bVκ (κ–230, κ–232) | 98904850-98905144 | − | yes | |
| bVκ st (κ–166) | 98889234-98889535 | − | yes | 98898348-98898616 |
| >9 Vκ on reverse strand | 98861572-98880208 | |||
| Vκ | 98807842-98808123 | + | yes | 98849776-98850195 |
| >10 Vκ on reverse strand | ||||
| Vκ | 98739177-98739342 | + | ||
| 18 Vκ on reverse strand | ||||
| Vk | 98635279-98635578 | − | ||
| 98634352-98635071 | + | |||
| cAJ874460 OCU-INRACCDDV0118 Microsatellite (tg)12 | 98634812-98634836 | |||
| Vκ | 98630969-98631265 | − | ||
| 6 Vκ on reverse strand | ||||
| Vκ | 98607292-98607587 | + | ||
| 16 Vκ on reverse strand | ||||
| Vκ | 98504852-98505151 | + | 98519157-98521310 | |
| 9 Vκ on reverse strand | − | |||
| Vκ | 98461462-98461758 | − | yes | 98473025-98475614 |
| Vκ | 98456577-98456876 | − | yes | 98460230-98460797 |
| Vκ | 98453275-98453573 | − | yes | |
| Vκ fs | 98395447-98395721 | + | Pro | |
| Vκ | 98390619-98390897 | + | Pro | |
| Vκ | 98343555-98343835 | + | Pro | |
| Vκ | 98303780-98304058 | − | Pro | |
| Vκ | 98298948-98299235 | − | Pro | |
| Vκ | 98254031-98254315 | + | Ala | |
| Vκ | 98246562-98246849 | + | Ala | |
| Vκ | 98239440-98239724 | + | yes | |
| IGKJ3 | 98226217-98226255 | − | NA | 98235051-98235308 |
| IGKJ2-4 | 98225838-98225876 | − | NA | |
| IGKJ1 | 98225536-98225572 | − | NA | |
| IGKC2 | 98223558-98223737 | − | NA | |
| d3’ enhancer | 98217226-98216069 | − | NA | |
| eVκ (mp054) | 98176612-98176896 | + | Ala | 98200751-98201488 |
| eVκ (mp057) | 98171978-98172262 | + | Ala | |
| fVκ (anti-A33) | 98168180-98168470 | + | Ala | |
| eVκ (mpl09) | 98156268-98156561 | + | Ala | |
| Vκ fs | 98149319-98149599 | + | Pro | |
| Vκ ps (409 bp insertion) | 98144730-98144777 | + | Ala | |
| 98144100-98144319 | + | |||
| eVκ (mp159) | 98137161-98137448 | + | yes | |
| bVκ (4-110 VκI–127) | 98129843-98130127 | + | Ala | 98133687-98134398 |
Abbreviations: O transcriptional orientation; NA not applicable; st stop codon; fs frameshift; ps pseudogene
a
Emorine and Max 1983a; 1983b; Esworthy and Max, 1986
b
Similar to sequences in (Sehgal et al.1999)
c
AJ874460 was previously unplaced (Chantry-Darmon et al. 2006)
e
similar to sequences in (Popkov et al. 2003)
f
similar to sequences in (Rader et al. 2000)