Table 3. Performances of CoCiter, FatiGO, Martini and Marmite on the nuclear and plasma membrane protein-coding dataset.
| Tools | Comparison | Time | P | CI | Description |
| CoCiter | Plasma membrane protein-coding genes vs. plasma membrane term | 1 min 15 sec | <0.001 | 12.3923 | |
| Nuclear protein coding genes vs. nucleus term | 1 min 50 sec | <0.001 | 12.9814 | ||
| Plasma membrane protein coding genes vs. nuclear protein-coding genes | 5 min 15 sec | 0.072 | 14.4227 | ||
| FatiGO | Plasma membrane protein-coding genes vs. plasma membrane term background | 18 min | <0.001 | membrane fraction, extrinsic to plasma membrane, lateral plasma membrane | Unable to accept user defined terms |
| Nuclear protein-coding genes vs. nucleus term backgroundz | 18 min | <0.01 | chromosome, ribonucleoprotein complex, pronucleus, membrane fraction, endomembrane system, extracellular space | Unable to accept user defined terms | |
| Plasma membrane protein coding genes vs. nuclear protein coding genes | 13 min | <0.001 | extracellular matrix, extracellular region part, extracellular space, basolateral plasma membrane, lateral plasma membrane, extrinsic to plasma membrane, Golgi apparatus, organelle membrane, endomembrane system, nuclear part, chromosome | ||
| Martini | Plasma membrane protein-coding genes vs. plasma membrane term | NA | NA | NA | Too many entries to carry on |
| Nuclear protein coding genes vs. nucleus term | NA | NA | NA | Too many entries to carry on | |
| Plasma membrane protein coding genes vs. nuclear protein-coding genes | 1 day 8 hour | <0.001 | transmembrane, membrane, plasma membrane, subnucleus, nucleus | ||
| Marmite | Plasma membrane protein-coding genes vs. plasma membrane term | NA | NA | NA | Unable to accept user defined terms |
| Nuclear protein coding genes vs. nucleus term | NA | NA | NA | Unable to accept user defined terms | |
| Plasma membrane protein coding genes vs. nuclear protein-coding genes | <1 min | 0.057 | Cancer |
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