Table 3. CpG usage of RNA viruses and their respective hosts.
Typea | Viral Number | Mean CpGO/E | Mean CpGO/E _CDS_12 | Mean CpGO/E _CDS_23 | Mean CpGO/E _CDS_31 | |
Hosts | B | 18 | 1.00±0.167 | 0.62±0.288 | 0.93±0.197 | 1.43±0.409 |
F | 12 | 0.88±0.126 | 0.62±0.072 | 0.79±0.149 | 1.24±0.209 | |
I | 14 | 1.02±0.090 | 0.60±0.074 | 1.07±0.163 | 1.41±0.179 | |
P | 9 | 0.69±0.206 | 0.47±0.031 | 0.64±0.223 | 0.95±0.372 | |
V | 17 | 0.47±0.042 | 0.46±0.176 | 0.37±0.048 | 0.58±0.079 | |
+ssRNA viruses | B | 9 | 1.10±0.056 | 1.00±0.104 | 0.94±0.118 | 1.47±0.143 |
F | 21 | 0.74±0.186 | 0.61±0.272 | 0.63±0.230 | 0.94±0.409 | |
I | 40 | 0.87±0.154 | 0.72±0.162 | 0.76±0.286 | 1.10±0.397 | |
P | 432 | 0.75±1.83 | 0.54±0.165 | 0.68±0.232 | 1.03±0.314 | |
V | 223 | 0.57±0.183 | 0.44±0.176 | 0.46±0.191 | 0.78±0.339 | |
−ssRNA viruses | I | 1 | 0.57 | 0.47 | 0.55 | 0.71 |
P | 24 | 0.35±0.108 | 0.18±0.086 | 0.33±0.124 | 0.49±0.159 | |
V | 126 | 0.38±0.120 | 0.28±0.140 | 0.33±0.122 | 0.49±0.186 | |
dsRNA viruses | B | 3 | 0.97±0.106 | 0.58±0.149 | 0.90±0.265 | 1.51±0.260 |
F | 50 | 0.98±0.174 | 0.70±0.177 | 0.80±0.224 | 1.46±0.420 | |
I | 14 | 0.91±0.193 | 0.64±0.257 | 0.90±0.281 | 1.21±0.210 | |
P | 26 | 0.88±0.158 | 0.67±0.208 | 0.63±0.237 | 1.31±0.303 | |
V | 37 | 0.88±0.168 | 0.65±0.217 | 0.88±0.332 | 1.13±0.250 | |
RT viruses | P | 50 | 0.50±0.126 | 0.32±0.136 | 0.38±0.114 | 0.73±0.236 |
V | 64 | 0.52±0.137 | 0.42±0.124 | 0.46±0.191 | 0.59±0.218 |
B, indicates bacteria or bacterium-infecting RNA viruses; F, indicates fungi or fungus-infecting RNA viruses; I, indicates invertebrates or invertebrate-infecting RNA viruses; P, indicates plants or plant-infecting RNA viruses; V, indicates vertebrates or vertebrate-infecting RNA viruses.