Table 3.
Dataset | MFO | MFa | BPO | BPa | CCO | CCa | All-GO | All-GOa | Pfam | Pfam and All-GO | PDBb |
---|---|---|---|---|---|---|---|---|---|---|---|
UniProtKB (5448)c | |||||||||||
Sequences | 795 | 539 | 908 | 716 | 952 | 732 | 1118 | 859 | 903 | 1209 | 558 |
Clusters | 541 | 345 | 645 | 492 | 670 | 493 | 806 | 594 | 658 | 892 | 365 |
Terms | 1306 | 1044 | 6684 | 6303 | 798 | 685 | 8788 | 8032 | 581 | 9369 | – |
Ensembl (171)c | |||||||||||
Sequences | 10 | 6 | 21 | 10 | 29 | 18 | 34 | 20 | 62 | 74 | 9 |
Clusters | 10 | 6 | 20 | 9 | 28 | 18 | 32 | 19 | 50 | 62 | 8 |
Terms | 37 | 20 | 306 | 264 | 117 | 89 | 460 | 373 | 45 | 505 | – |
Total (5619)c | |||||||||||
Sequences | 805 | 545 | 929 | 726 | 981 | 750 | 1152 | 879 | 965 | 1283 | 567 |
Clusters | 547 | 349 | 660 | 500 | 692 | 507 | 832 | 609 | 706 | 948 | 372 |
Terms | 1311 | 1046 | 6694 | 6313 | 811 | 697 | 8816 | 8056 | 621 | 9437 | – |
aTerms that are statistically validated and have an experimental evidence code with the corresponding number of sequences that inherit them in a given number of clusters.
bInherited with cluster HMMs.
cNumber of pig protein sequences in the two databases.