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. 2013 Oct;347(1):181–192. doi: 10.1124/jpet.113.206359

TABLE 1.

Sequences of the probes and primers used in the study

Name Direction Sequence
EMSA probes
 GS-ECR Forward 5′-gatcCTTAGTTATTCATTTCTGCAGAACTAATTTTTAACCTAG-3′
 GS-ECR Reverse 5′gatcCTAGGTTAAAAATTAGTTCTGCAGAAATGAATAACTAAG-3′
 GS-ECR_mut Forward 5′-gatcCTTA-GGGGTTCAGGTCTGCAGAACGGATTTTGGGCCTAG-3′
 GS-ECR_mut Reverse 5′-gatcCTAGGCCCAAAATCCGTTCTGCAGACCTGAACCCCTAAG-3′
 GS-HNF1_cons Forward 5′-gatcCCAGGTTAATGATTAACCCA-3′
 GS-HNF1_cons Reverse 5′-gatcTGGGTTAATCATTAACCTGG-3′
ChIP primers
 ChIP-ECR Forward 5′-CTGGCTCGTGGGTAAGAATTGTCTC-3′
 ChIP-ECR Reverse 5′ATGTCCAAGGCAATGCTAGGTTAAA-3′
 ChIP-Intron2 Forward 5′-GGCAGCGAGATCGAAGGACAACTGT-3′
 ChIP-Intron2 Reverse 5′-TCTCCTGCCTTCGGGTTTTCTCCAA-3′
Primers used in the generation of the reporter gene and the HNF1-overexpressing constructs
 OCT1 Promoter Forward 5′-TGCACAGAGAGAGAAACCAAAAGTC-3′
 OCT1 Promoter Reverse 5′-GCCAGCTCGAGATGTCTCCCTCAGAGATCTTTG-3′
 ECR Forward 5′-TCCTTGGATCCCCAGCTCCTCCTCCAAACT-3′
 ECR Reverse 5′-CCCGAGTCGACCTCATGATCTTAGCACCTAGCCTT-3′
 HNF1A Forward 5′-CCTGTGGATCCGAGCCATGGTTTCTAAACTGA-3′
 HNF1A Reverse 5′-AGCTTATCTAGAGTGGTTACTGGGAGGAAGAGG-3′
 HNF1B Forward 5′- CTTTTTCCGGATCCTTGGAAAATGGTGTCCAA-3′
 HNF1B Reverse 5′- GTGGTGTCTAGAGGCATCACCAGGCTTGTAGA-3′
Primers used for site-directed mutagenesis of the ECR1 Binding Sites
 HNF1A(A)_f Forward 5′-TTGGGGAATCAATCTTAGGGGTTCAGGTCTGCAGAACTAATTTTT A-3′
 HNF1A(A)_r Reverse 5′-TAAAAATTAGTTCTGCAGACCTGAACCCCTAAGATTGATTCCCCAA-3′
 HNF1A(B)_f Forward 5′-GGTTCAGGTCTGCAGAACGGATTTTGGGCCTAGCATTGCCTTGGAC-3′
 HNF1A(B)_r Reverse 5′-GTCCAAGGCAATGCTAGGCCCAAAATCCGTTCTGCAGACCTGAACC-3′

ChIP, chromatin immunoprecipitation. The unspecific sequences used in the radioactive labeling of the EMSA probes are given in lowercase letters. Mutated nucleotides are shown in boldface, and the artificially introduced restriction sites are underlined. The ATG start codons of HNF1α and HNF1β are given in italics.