. 2013 Oct;195(2):589–598. doi: 10.1534/genetics.113.154351

Table 2. Gene ontology analysis of 109 overexpressed genes in Columbia wild type after clipping.

Biological process	No. of genes	Selected genes
Response to stress	19	ATP1^a^,^b^,^c	CGL1^d	FNR1^a	GOLS2^e	PDE345^e	TCH4^b^,^d	WR3^c
Reproduction	9	AGL8^a^,^f	GRH1^g	GSH1^e	MPK6^h^,ⁱ	RP1^j
Carbohydrate metabolic process	9	CGL1^d	CINV1^b^,^g	G6PD1^a^,^g	GALAK^a^,^d^,^h	GOLS2^e	IAR4^e
Transport	9	ATP1^a^,^b^,^c	GDI2^k	WR3^c
Response to biotic stimulus	6	CYP38^e	FNR1^a	GSH1^e	MPK6^h^,ⁱ	WIN1^d
Generation of precursor metabolites and energy	5	FNR1^a	IAR4^e	ORF291^c	PDE345^e
Flower development	4	AGL8^a^,^f	GRH1^g	GSH1^e	MPK6^h^,ⁱ
Secondary metabolic process	2	GSH1^e	MPK6^h^,ⁱ
Photosynthesis	1	FNR1^a
Cell differentiation	1	AGL8^a^,^f
Growth	1	GRH1^g

Shown are a subset of biological processes and a selection of important genes. Superscripts indicate molecular function. See File S1 and File S2 for full gene ontology analysis.

Nucleotide/DNA/RNA binding.

Hydrolase activity.

Transporter activity.

Transferase activity.

Catalytic activity.

Sequence-specific DNA-binding transcription factor activity.

Protein binding.

Kinase activity.

ⁱ

Signal transducer activity.

Structural molecule activity.

Enzyme regulator activity.